miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26530 3' -60 NC_005357.1 + 33291 0.68 0.310302
Target:  5'- cGGCaCGGCCAccGCuGgcuaucgCGGCa-CGGCCa -3'
miRNA:   3'- -CCG-GCCGGU--CGuCaa-----GCCGaaGCCGG- -5'
26530 3' -60 NC_005357.1 + 33243 0.68 0.310302
Target:  5'- cGGCaCGGCCAccGCuGgcuaucgCGGCa-CGGCCa -3'
miRNA:   3'- -CCG-GCCGGU--CGuCaa-----GCCGaaGCCGG- -5'
26530 3' -60 NC_005357.1 + 33195 0.68 0.310302
Target:  5'- cGGCaCGGCCAccGCuGgcuaucgCGGCa-CGGCCa -3'
miRNA:   3'- -CCG-GCCGGU--CGuCaa-----GCCGaaGCCGG- -5'
26530 3' -60 NC_005357.1 + 32914 0.73 0.150267
Target:  5'- cGGCCacGGCCuGCA---CGGCUgcuguUCGGCCa -3'
miRNA:   3'- -CCGG--CCGGuCGUcaaGCCGA-----AGCCGG- -5'
26530 3' -60 NC_005357.1 + 32822 0.66 0.410825
Target:  5'- cGGUCGGacuacaCCAGCcGcaaCGGCUUCgccuGGCCg -3'
miRNA:   3'- -CCGGCC------GGUCGuCaa-GCCGAAG----CCGG- -5'
26530 3' -60 NC_005357.1 + 32768 0.68 0.325677
Target:  5'- cGGCCuuuuCCAGCGGUUCcGCgcgUGGCUg -3'
miRNA:   3'- -CCGGcc--GGUCGUCAAGcCGaa-GCCGG- -5'
26530 3' -60 NC_005357.1 + 32090 0.66 0.401708
Target:  5'- aGGCacacGCC-GCAGcgaCGGCUaCGGCCu -3'
miRNA:   3'- -CCGgc--CGGuCGUCaa-GCCGAaGCCGG- -5'
26530 3' -60 NC_005357.1 + 31916 0.75 0.096641
Target:  5'- uGGCCGGCgguCAGCAGUUCGucaagaGCa-CGGCCc -3'
miRNA:   3'- -CCGGCCG---GUCGUCAAGC------CGaaGCCGG- -5'
26530 3' -60 NC_005357.1 + 31452 0.67 0.366553
Target:  5'- cGGCCuGGCCGaacagguggccGCAGUgucccCGGCUgucGCCg -3'
miRNA:   3'- -CCGG-CCGGU-----------CGUCAa----GCCGAagcCGG- -5'
26530 3' -60 NC_005357.1 + 30844 0.68 0.295486
Target:  5'- cGGCCaGCCGGCGGcccugggCGGCa-UGGCUu -3'
miRNA:   3'- -CCGGcCGGUCGUCaa-----GCCGaaGCCGG- -5'
26530 3' -60 NC_005357.1 + 30141 0.66 0.39272
Target:  5'- cGCCGGCCuGCAccgcgUCGGacaucagCGGCa -3'
miRNA:   3'- cCGGCCGGuCGUca---AGCCgaa----GCCGg -5'
26530 3' -60 NC_005357.1 + 29738 0.68 0.31792
Target:  5'- -aUCGGCCAcGCcGUagaacUCGGCcUCGGCUg -3'
miRNA:   3'- ccGGCCGGU-CGuCA-----AGCCGaAGCCGG- -5'
26530 3' -60 NC_005357.1 + 29263 0.68 0.31792
Target:  5'- aGGCCGGCCGGUgucGGggUGGacgUGGUa -3'
miRNA:   3'- -CCGGCCGGUCG---UCaaGCCgaaGCCGg -5'
26530 3' -60 NC_005357.1 + 29247 0.66 0.39272
Target:  5'- cGCCGGCCAagggcgccCAGcgCGGCcgacacUGGCCg -3'
miRNA:   3'- cCGGCCGGUc-------GUCaaGCCGaa----GCCGG- -5'
26530 3' -60 NC_005357.1 + 28897 0.72 0.167395
Target:  5'- aGG-CGGCCGaCAGUUCGGCgcggaCGGCa -3'
miRNA:   3'- -CCgGCCGGUcGUCAAGCCGaa---GCCGg -5'
26530 3' -60 NC_005357.1 + 28635 0.79 0.047499
Target:  5'- aGGCCGGCCAguuccgcgcGCAGUgccagaUCGGUgccggCGGCCu -3'
miRNA:   3'- -CCGGCCGGU---------CGUCA------AGCCGaa---GCCGG- -5'
26530 3' -60 NC_005357.1 + 28557 0.73 0.146241
Target:  5'- cGGCC-GCCGGCcaucgCGGCgcgcacgUCGGCCa -3'
miRNA:   3'- -CCGGcCGGUCGucaa-GCCGa------AGCCGG- -5'
26530 3' -60 NC_005357.1 + 28177 0.69 0.266176
Target:  5'- cGCCGuugcccacGcCCAGCAGgugCGGCgccuuguccaggUCGGCCa -3'
miRNA:   3'- cCGGC--------C-GGUCGUCaa-GCCGa-----------AGCCGG- -5'
26530 3' -60 NC_005357.1 + 27700 0.71 0.206959
Target:  5'- aGGCCGcgcGCCGGCAG--CGGCUcgccgcCGGUCa -3'
miRNA:   3'- -CCGGC---CGGUCGUCaaGCCGAa-----GCCGG- -5'
26530 3' -60 NC_005357.1 + 27521 0.68 0.31792
Target:  5'- aGGCCGGCCAGCAGcagaUC-GCcgCGcagacccugaaaGCCg -3'
miRNA:   3'- -CCGGCCGGUCGUCa---AGcCGaaGC------------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.