miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26530 3' -60 NC_005357.1 + 42047 0.67 0.341611
Target:  5'- cGCUGGCCGcGCucaaUCGGCa--GGCCa -3'
miRNA:   3'- cCGGCCGGU-CGuca-AGCCGaagCCGG- -5'
26530 3' -60 NC_005357.1 + 41746 0.68 0.288286
Target:  5'- cGGcCCGGCCGGCGccgccGUaggCGGCcuggUGGCUa -3'
miRNA:   3'- -CC-GGCCGGUCGU-----CAa--GCCGaa--GCCGG- -5'
26530 3' -60 NC_005357.1 + 41403 0.67 0.366553
Target:  5'- cGCCGGCCguggccuuccAGguGUUCGacGCUgCGGUg -3'
miRNA:   3'- cCGGCCGG----------UCguCAAGC--CGAaGCCGg -5'
26530 3' -60 NC_005357.1 + 40563 0.68 0.313332
Target:  5'- cGCCGGCCAcgggcugaaccuGCAagacggCGGCaacauccuggcuuucUUCGGCCa -3'
miRNA:   3'- cCGGCCGGU------------CGUcaa---GCCG---------------AAGCCGG- -5'
26530 3' -60 NC_005357.1 + 39601 0.67 0.331191
Target:  5'- uGGCCuuuccucaauagguGGUCAGcCGGUUCuguccuGCUUCGGCg -3'
miRNA:   3'- -CCGG--------------CCGGUC-GUCAAGc-----CGAAGCCGg -5'
26530 3' -60 NC_005357.1 + 38881 0.69 0.260867
Target:  5'- cGGCgCGGUUGGCGGgacugcgCGGUgugCGGCUg -3'
miRNA:   3'- -CCG-GCCGGUCGUCaa-----GCCGaa-GCCGG- -5'
26530 3' -60 NC_005357.1 + 38266 0.71 0.18137
Target:  5'- cGGCCGGCUAcCAGaUCGuGCUgUCGGUa -3'
miRNA:   3'- -CCGGCCGGUcGUCaAGC-CGA-AGCCGg -5'
26530 3' -60 NC_005357.1 + 37838 0.68 0.31792
Target:  5'- aGGCCGagcaguuccucGCCuggcgcaccgAGCAGcgccUCGGCgacuUCGGCCu -3'
miRNA:   3'- -CCGGC-----------CGG----------UCGUCa---AGCCGa---AGCCGG- -5'
26530 3' -60 NC_005357.1 + 36204 0.67 0.333575
Target:  5'- aGGCCcuGGCCGaaggcaaaacGCAGaacccggCGGCUaUCGGCUu -3'
miRNA:   3'- -CCGG--CCGGU----------CGUCaa-----GCCGA-AGCCGG- -5'
26530 3' -60 NC_005357.1 + 36082 0.67 0.37514
Target:  5'- cGGCCuucgGGCCgGGCGcUUUGGCUggGGCg -3'
miRNA:   3'- -CCGG----CCGG-UCGUcAAGCCGAagCCGg -5'
26530 3' -60 NC_005357.1 + 36044 0.66 0.429441
Target:  5'- gGGCCGGCCGGCcug-CGcCUgauugccgacgUgGGCCg -3'
miRNA:   3'- -CCGGCCGGUCGucaaGCcGA-----------AgCCGG- -5'
26530 3' -60 NC_005357.1 + 35156 0.67 0.341611
Target:  5'- cGGCCccgaGGCCaagcAGCAGUUCaagacCUgggCGGCCg -3'
miRNA:   3'- -CCGG----CCGG----UCGUCAAGcc---GAa--GCCGG- -5'
26530 3' -60 NC_005357.1 + 35011 0.72 0.154393
Target:  5'- uGGCCGGCCAucCGGUgccCGGCUUCaagcugguggaaGGUCg -3'
miRNA:   3'- -CCGGCCGGUc-GUCAa--GCCGAAG------------CCGG- -5'
26530 3' -60 NC_005357.1 + 34703 0.76 0.083743
Target:  5'- aGCCGGCCGccgagcgugcgcuGCAGUucaUCGGCaagcCGGCCg -3'
miRNA:   3'- cCGGCCGGU-------------CGUCA---AGCCGaa--GCCGG- -5'
26530 3' -60 NC_005357.1 + 34317 0.69 0.267517
Target:  5'- cGCCGGCCGcGCGGUgcagGGCcucaaacgcuuUUgGGCCu -3'
miRNA:   3'- cCGGCCGGU-CGUCAag--CCG-----------AAgCCGG- -5'
26530 3' -60 NC_005357.1 + 34034 0.67 0.333575
Target:  5'- uGGCCGacuggcuacgcaGCCAGCgcgAGgcCGGgUUCGaGCCg -3'
miRNA:   3'- -CCGGC------------CGGUCG---UCaaGCCgAAGC-CGG- -5'
26530 3' -60 NC_005357.1 + 33609 0.73 0.130386
Target:  5'- cGGCUGGCCcgacccAGCAGaUCGGUacugaccggcgCGGCCg -3'
miRNA:   3'- -CCGGCCGG------UCGUCaAGCCGaa---------GCCGG- -5'
26530 3' -60 NC_005357.1 + 33459 0.68 0.310302
Target:  5'- cGGCaCGGCCAccGCuGgcuaucgCGGCa-CGGCCa -3'
miRNA:   3'- -CCG-GCCGGU--CGuCaa-----GCCGaaGCCGG- -5'
26530 3' -60 NC_005357.1 + 33387 0.68 0.310302
Target:  5'- cGGCaCGGCCAccGCuGgcuaucgCGGCa-CGGCCa -3'
miRNA:   3'- -CCG-GCCGGU--CGuCaa-----GCCGaaGCCGG- -5'
26530 3' -60 NC_005357.1 + 33339 0.68 0.310302
Target:  5'- cGGCaCGGCCAccGCuGgcuaucgCGGCa-CGGCCa -3'
miRNA:   3'- -CCG-GCCGGU--CGuCaa-----GCCGaaGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.