miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26530 3' -60 NC_005357.1 + 27700 0.71 0.206959
Target:  5'- aGGCCGcgcGCCGGCAG--CGGCUcgccgcCGGUCa -3'
miRNA:   3'- -CCGGC---CGGUCGUCaaGCCGAa-----GCCGG- -5'
26530 3' -60 NC_005357.1 + 32914 0.73 0.150267
Target:  5'- cGGCCacGGCCuGCA---CGGCUgcuguUCGGCCa -3'
miRNA:   3'- -CCGG--CCGGuCGUcaaGCCGA-----AGCCGG- -5'
26530 3' -60 NC_005357.1 + 35011 0.72 0.154393
Target:  5'- uGGCCGGCCAucCGGUgccCGGCUUCaagcugguggaaGGUCg -3'
miRNA:   3'- -CCGGCCGGUc-GUCAa--GCCGAAG------------CCGG- -5'
26530 3' -60 NC_005357.1 + 38266 0.71 0.18137
Target:  5'- cGGCCGGCUAcCAGaUCGuGCUgUCGGUa -3'
miRNA:   3'- -CCGGCCGGUcGUCaAGC-CGA-AGCCGg -5'
26530 3' -60 NC_005357.1 + 13443 0.71 0.186253
Target:  5'- aGGCCcGCCAGCuuggCGGCcUCGGgCg -3'
miRNA:   3'- -CCGGcCGGUCGucaaGCCGaAGCCgG- -5'
26530 3' -60 NC_005357.1 + 16037 0.71 0.186253
Target:  5'- uGGCCuGCCAGUuguaggccAGUUCGcGCacgUGGCCg -3'
miRNA:   3'- -CCGGcCGGUCG--------UCAAGC-CGaa-GCCGG- -5'
26530 3' -60 NC_005357.1 + 403 0.71 0.186253
Target:  5'- cGCCcaCCAGCAGcaCGGCggugaucgUCGGCCg -3'
miRNA:   3'- cCGGccGGUCGUCaaGCCGa-------AGCCGG- -5'
26530 3' -60 NC_005357.1 + 10836 0.71 0.191252
Target:  5'- cGGCuCGGUCuugagguggucgAGCAGgcccugcgUGGCUUCGGUCg -3'
miRNA:   3'- -CCG-GCCGG------------UCGUCaa------GCCGAAGCCGG- -5'
26530 3' -60 NC_005357.1 + 20331 0.71 0.196368
Target:  5'- gGGCUGGCCuuCAGUggucguugCGGCUUCcGUCa -3'
miRNA:   3'- -CCGGCCGGucGUCAa-------GCCGAAGcCGG- -5'
26530 3' -60 NC_005357.1 + 28557 0.73 0.146241
Target:  5'- cGGCC-GCCGGCcaucgCGGCgcgcacgUCGGCCa -3'
miRNA:   3'- -CCGGcCGGUCGucaa-GCCGa------AGCCGG- -5'
26530 3' -60 NC_005357.1 + 22983 0.74 0.117425
Target:  5'- aGCCGGUCGGa--UUCGGCUuucgccuggUCGGCCu -3'
miRNA:   3'- cCGGCCGGUCgucAAGCCGA---------AGCCGG- -5'
26530 3' -60 NC_005357.1 + 612 0.74 0.110479
Target:  5'- gGGUCGGCCAGCAGcgccguggacaCGGCgucCGGCg -3'
miRNA:   3'- -CCGGCCGGUCGUCaa---------GCCGaa-GCCGg -5'
26530 3' -60 NC_005357.1 + 12009 0.85 0.017716
Target:  5'- cGUCGGCCAGCAGcgCGGCcgUGGCCg -3'
miRNA:   3'- cCGGCCGGUCGUCaaGCCGaaGCCGG- -5'
26530 3' -60 NC_005357.1 + 28635 0.79 0.047499
Target:  5'- aGGCCGGCCAguuccgcgcGCAGUgccagaUCGGUgccggCGGCCu -3'
miRNA:   3'- -CCGGCCGGU---------CGUCA------AGCCGaa---GCCGG- -5'
26530 3' -60 NC_005357.1 + 1531 0.79 0.047499
Target:  5'- cGCCGcCCAGCAGUUCGGCcUUGGUa -3'
miRNA:   3'- cCGGCcGGUCGUCAAGCCGaAGCCGg -5'
26530 3' -60 NC_005357.1 + 23202 0.77 0.070869
Target:  5'- aGGUCGGCCucguCGGUgaauUCGGCcUCGGCCu -3'
miRNA:   3'- -CCGGCCGGuc--GUCA----AGCCGaAGCCGG- -5'
26530 3' -60 NC_005357.1 + 34703 0.76 0.083743
Target:  5'- aGCCGGCCGccgagcgugcgcuGCAGUucaUCGGCaagcCGGCCg -3'
miRNA:   3'- cCGGCCGGU-------------CGUCA---AGCCGaa--GCCGG- -5'
26530 3' -60 NC_005357.1 + 6395 0.76 0.086378
Target:  5'- aGGCCGGCCGGCc---CGGUguagucgCGGCCc -3'
miRNA:   3'- -CCGGCCGGUCGucaaGCCGaa-----GCCGG- -5'
26530 3' -60 NC_005357.1 + 14133 0.75 0.096641
Target:  5'- cGUCGGCCAGCGGcUUGcCUUCcGGCCg -3'
miRNA:   3'- cCGGCCGGUCGUCaAGCcGAAG-CCGG- -5'
26530 3' -60 NC_005357.1 + 8848 0.75 0.099382
Target:  5'- cGCgGGCCAGCGcgUUGGCcUCGGUCg -3'
miRNA:   3'- cCGgCCGGUCGUcaAGCCGaAGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.