Results 21 - 40 of 143 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26530 | 3' | -60 | NC_005357.1 | + | 27700 | 0.71 | 0.206959 |
Target: 5'- aGGCCGcgcGCCGGCAG--CGGCUcgccgcCGGUCa -3' miRNA: 3'- -CCGGC---CGGUCGUCaaGCCGAa-----GCCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 20331 | 0.71 | 0.196368 |
Target: 5'- gGGCUGGCCuuCAGUggucguugCGGCUUCcGUCa -3' miRNA: 3'- -CCGGCCGGucGUCAa-------GCCGAAGcCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 8848 | 0.75 | 0.099382 |
Target: 5'- cGCgGGCCAGCGcgUUGGCcUCGGUCg -3' miRNA: 3'- cCGgCCGGUCGUcaAGCCGaAGCCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 14133 | 0.75 | 0.096641 |
Target: 5'- cGUCGGCCAGCGGcUUGcCUUCcGGCCg -3' miRNA: 3'- cCGGCCGGUCGUCaAGCcGAAG-CCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 6395 | 0.76 | 0.086378 |
Target: 5'- aGGCCGGCCGGCc---CGGUguagucgCGGCCc -3' miRNA: 3'- -CCGGCCGGUCGucaaGCCGaa-----GCCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 34703 | 0.76 | 0.083743 |
Target: 5'- aGCCGGCCGccgagcgugcgcuGCAGUucaUCGGCaagcCGGCCg -3' miRNA: 3'- cCGGCCGGU-------------CGUCA---AGCCGaa--GCCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 23202 | 0.77 | 0.070869 |
Target: 5'- aGGUCGGCCucguCGGUgaauUCGGCcUCGGCCu -3' miRNA: 3'- -CCGGCCGGuc--GUCA----AGCCGaAGCCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 1531 | 0.79 | 0.047499 |
Target: 5'- cGCCGcCCAGCAGUUCGGCcUUGGUa -3' miRNA: 3'- cCGGCcGGUCGUCAAGCCGaAGCCGg -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 28635 | 0.79 | 0.047499 |
Target: 5'- aGGCCGGCCAguuccgcgcGCAGUgccagaUCGGUgccggCGGCCu -3' miRNA: 3'- -CCGGCCGGU---------CGUCA------AGCCGaa---GCCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 12009 | 0.85 | 0.017716 |
Target: 5'- cGUCGGCCAGCAGcgCGGCcgUGGCCg -3' miRNA: 3'- cCGGCCGGUCGUCaaGCCGaaGCCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 612 | 0.74 | 0.110479 |
Target: 5'- gGGUCGGCCAGCAGcgccguggacaCGGCgucCGGCg -3' miRNA: 3'- -CCGGCCGGUCGUCaa---------GCCGaa-GCCGg -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 22983 | 0.74 | 0.117425 |
Target: 5'- aGCCGGUCGGa--UUCGGCUuucgccuggUCGGCCu -3' miRNA: 3'- cCGGCCGGUCgucAAGCCGA---------AGCCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 10836 | 0.71 | 0.191252 |
Target: 5'- cGGCuCGGUCuugagguggucgAGCAGgcccugcgUGGCUUCGGUCg -3' miRNA: 3'- -CCG-GCCGG------------UCGUCaa------GCCGAAGCCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 403 | 0.71 | 0.186253 |
Target: 5'- cGCCcaCCAGCAGcaCGGCggugaucgUCGGCCg -3' miRNA: 3'- cCGGccGGUCGUCaaGCCGa-------AGCCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 16037 | 0.71 | 0.186253 |
Target: 5'- uGGCCuGCCAGUuguaggccAGUUCGcGCacgUGGCCg -3' miRNA: 3'- -CCGGcCGGUCG--------UCAAGC-CGaa-GCCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 13443 | 0.71 | 0.186253 |
Target: 5'- aGGCCcGCCAGCuuggCGGCcUCGGgCg -3' miRNA: 3'- -CCGGcCGGUCGucaaGCCGaAGCCgG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 38266 | 0.71 | 0.18137 |
Target: 5'- cGGCCGGCUAcCAGaUCGuGCUgUCGGUa -3' miRNA: 3'- -CCGGCCGGUcGUCaAGC-CGA-AGCCGg -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 35011 | 0.72 | 0.154393 |
Target: 5'- uGGCCGGCCAucCGGUgccCGGCUUCaagcugguggaaGGUCg -3' miRNA: 3'- -CCGGCCGGUc-GUCAa--GCCGAAG------------CCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 32914 | 0.73 | 0.150267 |
Target: 5'- cGGCCacGGCCuGCA---CGGCUgcuguUCGGCCa -3' miRNA: 3'- -CCGG--CCGGuCGUcaaGCCGA-----AGCCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 28557 | 0.73 | 0.146241 |
Target: 5'- cGGCC-GCCGGCcaucgCGGCgcgcacgUCGGCCa -3' miRNA: 3'- -CCGGcCGGUCGucaa-GCCGa------AGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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