miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26530 3' -60 NC_005357.1 + 28557 0.73 0.146241
Target:  5'- cGGCC-GCCGGCcaucgCGGCgcgcacgUCGGCCa -3'
miRNA:   3'- -CCGGcCGGUCGucaa-GCCGa------AGCCGG- -5'
26530 3' -60 NC_005357.1 + 32914 0.73 0.150267
Target:  5'- cGGCCacGGCCuGCA---CGGCUgcuguUCGGCCa -3'
miRNA:   3'- -CCGG--CCGGuCGUcaaGCCGA-----AGCCGG- -5'
26530 3' -60 NC_005357.1 + 19598 0.73 0.150267
Target:  5'- uGUCGGCUgucGGCAGcgCGGCgaagUCgGGCCa -3'
miRNA:   3'- cCGGCCGG---UCGUCaaGCCGa---AG-CCGG- -5'
26530 3' -60 NC_005357.1 + 4040 0.72 0.154393
Target:  5'- aGCCGGCC-GCGGcgagCGGCa--GGCCa -3'
miRNA:   3'- cCGGCCGGuCGUCaa--GCCGaagCCGG- -5'
26530 3' -60 NC_005357.1 + 35011 0.72 0.154393
Target:  5'- uGGCCGGCCAucCGGUgccCGGCUUCaagcugguggaaGGUCg -3'
miRNA:   3'- -CCGGCCGGUc-GUCAa--GCCGAAG------------CCGG- -5'
26530 3' -60 NC_005357.1 + 28897 0.72 0.167395
Target:  5'- aGG-CGGCCGaCAGUUCGGCgcggaCGGCa -3'
miRNA:   3'- -CCgGCCGGUcGUCAAGCCGaa---GCCGg -5'
26530 3' -60 NC_005357.1 + 20115 0.72 0.176601
Target:  5'- cGGCaCGGCCAGCAGcaUCGuGCUgcccgacuUCGacGCCg -3'
miRNA:   3'- -CCG-GCCGGUCGUCa-AGC-CGA--------AGC--CGG- -5'
26530 3' -60 NC_005357.1 + 24152 0.71 0.180888
Target:  5'- cGGCCcgcugacGGCCGGCaAGUucUCGGCgcaGGUCg -3'
miRNA:   3'- -CCGG-------CCGGUCG-UCA--AGCCGaagCCGG- -5'
26530 3' -60 NC_005357.1 + 9507 0.71 0.18137
Target:  5'- uGGCCGaacaGCCAGCcGUgcaGGCcgUGGCCg -3'
miRNA:   3'- -CCGGC----CGGUCGuCAag-CCGaaGCCGG- -5'
26530 3' -60 NC_005357.1 + 38266 0.71 0.18137
Target:  5'- cGGCCGGCUAcCAGaUCGuGCUgUCGGUa -3'
miRNA:   3'- -CCGGCCGGUcGUCaAGC-CGA-AGCCGg -5'
26530 3' -60 NC_005357.1 + 403 0.71 0.186253
Target:  5'- cGCCcaCCAGCAGcaCGGCggugaucgUCGGCCg -3'
miRNA:   3'- cCGGccGGUCGUCaaGCCGa-------AGCCGG- -5'
26530 3' -60 NC_005357.1 + 16037 0.71 0.186253
Target:  5'- uGGCCuGCCAGUuguaggccAGUUCGcGCacgUGGCCg -3'
miRNA:   3'- -CCGGcCGGUCG--------UCAAGC-CGaa-GCCGG- -5'
26530 3' -60 NC_005357.1 + 13443 0.71 0.186253
Target:  5'- aGGCCcGCCAGCuuggCGGCcUCGGgCg -3'
miRNA:   3'- -CCGGcCGGUCGucaaGCCGaAGCCgG- -5'
26530 3' -60 NC_005357.1 + 10836 0.71 0.191252
Target:  5'- cGGCuCGGUCuugagguggucgAGCAGgcccugcgUGGCUUCGGUCg -3'
miRNA:   3'- -CCG-GCCGG------------UCGUCaa------GCCGAAGCCGG- -5'
26530 3' -60 NC_005357.1 + 20331 0.71 0.196368
Target:  5'- gGGCUGGCCuuCAGUggucguugCGGCUUCcGUCa -3'
miRNA:   3'- -CCGGCCGGucGUCAa-------GCCGAAGcCGG- -5'
26530 3' -60 NC_005357.1 + 27700 0.71 0.206959
Target:  5'- aGGCCGcgcGCCGGCAG--CGGCUcgccgcCGGUCa -3'
miRNA:   3'- -CCGGC---CGGUCGUCaaGCCGAa-----GCCGG- -5'
26530 3' -60 NC_005357.1 + 22798 0.71 0.206959
Target:  5'- gGGCCGGUCAGCauGGUgcCGGac-UGGCCc -3'
miRNA:   3'- -CCGGCCGGUCG--UCAa-GCCgaaGCCGG- -5'
26530 3' -60 NC_005357.1 + 14588 0.71 0.209136
Target:  5'- uGCCGGCggccgauccgcuuuuCAGCAGUgcgUCGGCUUccaugcuucCGGCg -3'
miRNA:   3'- cCGGCCG---------------GUCGUCA---AGCCGAA---------GCCGg -5'
26530 3' -60 NC_005357.1 + 21259 0.7 0.212438
Target:  5'- gGGUCGaugcCCAGCAugUCGGCguaagugUCGGCCc -3'
miRNA:   3'- -CCGGCc---GGUCGUcaAGCCGa------AGCCGG- -5'
26530 3' -60 NC_005357.1 + 13311 0.7 0.212438
Target:  5'- gGGCCGGCguuguaGGCGGcguaGGCUuUCGGCa -3'
miRNA:   3'- -CCGGCCGg-----UCGUCaag-CCGA-AGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.