miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26530 3' -60 NC_005357.1 + 41403 0.67 0.366553
Target:  5'- cGCCGGCCguggccuuccAGguGUUCGacGCUgCGGUg -3'
miRNA:   3'- cCGGCCGG----------UCguCAAGC--CGAaGCCGg -5'
26530 3' -60 NC_005357.1 + 11124 0.67 0.366553
Target:  5'- uGGUucaaaCGuGCgAGCAGUUCGGCcugcugcUgGGCCg -3'
miRNA:   3'- -CCG-----GC-CGgUCGUCAAGCCGa------AgCCGG- -5'
26530 3' -60 NC_005357.1 + 31452 0.67 0.366553
Target:  5'- cGGCCuGGCCGaacagguggccGCAGUgucccCGGCUgucGCCg -3'
miRNA:   3'- -CCGG-CCGGU-----------CGUCAa----GCCGAagcCGG- -5'
26530 3' -60 NC_005357.1 + 15459 0.67 0.366553
Target:  5'- cGUCGGUCGGC--UUCGGUgUUGGCUu -3'
miRNA:   3'- cCGGCCGGUCGucAAGCCGaAGCCGG- -5'
26530 3' -60 NC_005357.1 + 21522 0.67 0.364003
Target:  5'- aGGCUGggcaucgacacguuGCCGGCAG-UCGGUUccgUGGUCg -3'
miRNA:   3'- -CCGGC--------------CGGUCGUCaAGCCGAa--GCCGG- -5'
26530 3' -60 NC_005357.1 + 25592 0.67 0.358101
Target:  5'- cGGUcugCGGCCcaGGCAGUggcaaccaCGGCggcgCGGUCg -3'
miRNA:   3'- -CCG---GCCGG--UCGUCAa-------GCCGaa--GCCGG- -5'
26530 3' -60 NC_005357.1 + 24040 0.67 0.358101
Target:  5'- uGGCCGccaCCGGCGccaUCGGCaa-GGCCa -3'
miRNA:   3'- -CCGGCc--GGUCGUca-AGCCGaagCCGG- -5'
26530 3' -60 NC_005357.1 + 11337 0.67 0.349787
Target:  5'- cGCCGGCCuGCaccgaGGUgagcagCGGCaccaGGCCc -3'
miRNA:   3'- cCGGCCGGuCG-----UCAa-----GCCGaag-CCGG- -5'
26530 3' -60 NC_005357.1 + 2248 0.67 0.349787
Target:  5'- gGGCCuuGGCCGGCAGUUCGa---CGcGCa -3'
miRNA:   3'- -CCGG--CCGGUCGUCAAGCcgaaGC-CGg -5'
26530 3' -60 NC_005357.1 + 4801 0.67 0.349787
Target:  5'- cGCCGGCUGGCGcugCGGgaUugcUGGCCg -3'
miRNA:   3'- cCGGCCGGUCGUcaaGCCgaA---GCCGG- -5'
26530 3' -60 NC_005357.1 + 24647 0.67 0.349787
Target:  5'- uGCCGGCgGGcCAGgaUGGUguugUCGcGCCc -3'
miRNA:   3'- cCGGCCGgUC-GUCaaGCCGa---AGC-CGG- -5'
26530 3' -60 NC_005357.1 + 18461 0.67 0.341611
Target:  5'- cGGUCGcggcGCCGGCGGcgUCGGCcgaUUCGuCCa -3'
miRNA:   3'- -CCGGC----CGGUCGUCa-AGCCG---AAGCcGG- -5'
26530 3' -60 NC_005357.1 + 25896 0.67 0.341611
Target:  5'- aGG-CGGCCuGUA---CGGCUauaUCGGCCa -3'
miRNA:   3'- -CCgGCCGGuCGUcaaGCCGA---AGCCGG- -5'
26530 3' -60 NC_005357.1 + 14600 0.67 0.341611
Target:  5'- cGGCCGGCgccaccgcgggCAGCGcgcgcgaggacGUgcugCGGCUgcgCGGCg -3'
miRNA:   3'- -CCGGCCG-----------GUCGU-----------CAa---GCCGAa--GCCGg -5'
26530 3' -60 NC_005357.1 + 42047 0.67 0.341611
Target:  5'- cGCUGGCCGcGCucaaUCGGCa--GGCCa -3'
miRNA:   3'- cCGGCCGGU-CGuca-AGCCGaagCCGG- -5'
26530 3' -60 NC_005357.1 + 35156 0.67 0.341611
Target:  5'- cGGCCccgaGGCCaagcAGCAGUUCaagacCUgggCGGCCg -3'
miRNA:   3'- -CCGG----CCGG----UCGUCAAGcc---GAa--GCCGG- -5'
26530 3' -60 NC_005357.1 + 24422 0.67 0.341611
Target:  5'- aGCCGGCCcgauuuGuCGGUgccgcgcgCGGCcUCGGCg -3'
miRNA:   3'- cCGGCCGGu-----C-GUCAa-------GCCGaAGCCGg -5'
26530 3' -60 NC_005357.1 + 4884 0.67 0.341611
Target:  5'- aGCgCGGCgaCGGCGGccUCGuuUUCGGCCa -3'
miRNA:   3'- cCG-GCCG--GUCGUCa-AGCcgAAGCCGG- -5'
26530 3' -60 NC_005357.1 + 18699 0.67 0.333575
Target:  5'- gGGCCucGGUCAGCAGcagcgcaUCGGUacggCGGCa -3'
miRNA:   3'- -CCGG--CCGGUCGUCa------AGCCGaa--GCCGg -5'
26530 3' -60 NC_005357.1 + 36204 0.67 0.333575
Target:  5'- aGGCCcuGGCCGaaggcaaaacGCAGaacccggCGGCUaUCGGCUu -3'
miRNA:   3'- -CCGG--CCGGU----------CGUCaa-----GCCGA-AGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.