Results 41 - 60 of 143 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26530 | 3' | -60 | NC_005357.1 | + | 36204 | 0.67 | 0.333575 |
Target: 5'- aGGCCcuGGCCGaaggcaaaacGCAGaacccggCGGCUaUCGGCUu -3' miRNA: 3'- -CCGG--CCGGU----------CGUCaa-----GCCGA-AGCCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 39601 | 0.67 | 0.331191 |
Target: 5'- uGGCCuuuccucaauagguGGUCAGcCGGUUCuguccuGCUUCGGCg -3' miRNA: 3'- -CCGG--------------CCGGUC-GUCAAGc-----CGAAGCCGg -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 19099 | 0.68 | 0.325677 |
Target: 5'- aGGCCGGCCuGCgaacccuucgGGUagaUGGUaugcagggugUUCGGCCc -3' miRNA: 3'- -CCGGCCGGuCG----------UCAa--GCCG----------AAGCCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 17078 | 0.68 | 0.325677 |
Target: 5'- uGGCCGGCUAuGCGaacUGGC--CGGCCu -3' miRNA: 3'- -CCGGCCGGU-CGUcaaGCCGaaGCCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 11839 | 0.68 | 0.325677 |
Target: 5'- cGGCCGcGCC-GCGGUU-GGCcUgGGCg -3' miRNA: 3'- -CCGGC-CGGuCGUCAAgCCGaAgCCGg -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 32768 | 0.68 | 0.325677 |
Target: 5'- cGGCCuuuuCCAGCGGUUCcGCgcgUGGCUg -3' miRNA: 3'- -CCGGcc--GGUCGUCAAGcCGaa-GCCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 29738 | 0.68 | 0.31792 |
Target: 5'- -aUCGGCCAcGCcGUagaacUCGGCcUCGGCUg -3' miRNA: 3'- ccGGCCGGU-CGuCA-----AGCCGaAGCCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 17089 | 0.68 | 0.31792 |
Target: 5'- aGCCGGC--GCGGUucUCGGCcg-GGCCu -3' miRNA: 3'- cCGGCCGguCGUCA--AGCCGaagCCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 37838 | 0.68 | 0.31792 |
Target: 5'- aGGCCGagcaguuccucGCCuggcgcaccgAGCAGcgccUCGGCgacuUCGGCCu -3' miRNA: 3'- -CCGGC-----------CGG----------UCGUCa---AGCCGa---AGCCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 29263 | 0.68 | 0.31792 |
Target: 5'- aGGCCGGCCGGUgucGGggUGGacgUGGUa -3' miRNA: 3'- -CCGGCCGGUCG---UCaaGCCgaaGCCGg -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 10770 | 0.68 | 0.31792 |
Target: 5'- -uUCGGCCcGCAGUUC---UUCGGCCu -3' miRNA: 3'- ccGGCCGGuCGUCAAGccgAAGCCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 13180 | 0.68 | 0.31792 |
Target: 5'- cGGCCGGCCuuaugAGUGGa-CGGacuuCUUCGGCg -3' miRNA: 3'- -CCGGCCGG-----UCGUCaaGCC----GAAGCCGg -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 27521 | 0.68 | 0.31792 |
Target: 5'- aGGCCGGCCAGCAGcagaUC-GCcgCGcagacccugaaaGCCg -3' miRNA: 3'- -CCGGCCGGUCGUCa---AGcCGaaGC------------CGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 13135 | 0.68 | 0.31792 |
Target: 5'- gGGCaagGGCCAGCAGUUCG---UC-GCCu -3' miRNA: 3'- -CCGg--CCGGUCGUCAAGCcgaAGcCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 40563 | 0.68 | 0.313332 |
Target: 5'- cGCCGGCCAcgggcugaaccuGCAagacggCGGCaacauccuggcuuucUUCGGCCa -3' miRNA: 3'- cCGGCCGGU------------CGUcaa---GCCG---------------AAGCCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 9907 | 0.68 | 0.311058 |
Target: 5'- uGGCCGGCaucacCAGCcugcacgggcgcggAGUUCucggccuuggauucgGGCgcaUCGGCCg -3' miRNA: 3'- -CCGGCCG-----GUCG--------------UCAAG---------------CCGa--AGCCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 33291 | 0.68 | 0.310302 |
Target: 5'- cGGCaCGGCCAccGCuGgcuaucgCGGCa-CGGCCa -3' miRNA: 3'- -CCG-GCCGGU--CGuCaa-----GCCGaaGCCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 33387 | 0.68 | 0.310302 |
Target: 5'- cGGCaCGGCCAccGCuGgcuaucgCGGCa-CGGCCa -3' miRNA: 3'- -CCG-GCCGGU--CGuCaa-----GCCGaaGCCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 33459 | 0.68 | 0.310302 |
Target: 5'- cGGCaCGGCCAccGCuGgcuaucgCGGCa-CGGCCa -3' miRNA: 3'- -CCG-GCCGGU--CGuCaa-----GCCGaaGCCGG- -5' |
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26530 | 3' | -60 | NC_005357.1 | + | 9201 | 0.68 | 0.310302 |
Target: 5'- uGGCCuGCuCGGCGGcgCGGCgcacguucugCGGCg -3' miRNA: 3'- -CCGGcCG-GUCGUCaaGCCGaa--------GCCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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