miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26530 3' -60 NC_005357.1 + 7432 1.12 0.000138
Target:  5'- uGGCCGGCCAGCAGUUCGGCUUCGGCCu -3'
miRNA:   3'- -CCGGCCGGUCGUCAAGCCGAAGCCGG- -5'
26530 3' -60 NC_005357.1 + 7858 0.87 0.012473
Target:  5'- aGGCgGGCUucGCGGUUCaGGCUUCGGCCg -3'
miRNA:   3'- -CCGgCCGGu-CGUCAAG-CCGAAGCCGG- -5'
26530 3' -60 NC_005357.1 + 12009 0.85 0.017716
Target:  5'- cGUCGGCCAGCAGcgCGGCcgUGGCCg -3'
miRNA:   3'- cCGGCCGGUCGUCaaGCCGaaGCCGG- -5'
26530 3' -60 NC_005357.1 + 4093 0.82 0.032074
Target:  5'- aGGCCGGCCAGguGggCGGCgcugaauucgucgCGGUCg -3'
miRNA:   3'- -CCGGCCGGUCguCaaGCCGaa-----------GCCGG- -5'
26530 3' -60 NC_005357.1 + 28635 0.79 0.047499
Target:  5'- aGGCCGGCCAguuccgcgcGCAGUgccagaUCGGUgccggCGGCCu -3'
miRNA:   3'- -CCGGCCGGU---------CGUCA------AGCCGaa---GCCGG- -5'
26530 3' -60 NC_005357.1 + 1531 0.79 0.047499
Target:  5'- cGCCGcCCAGCAGUUCGGCcUUGGUa -3'
miRNA:   3'- cCGGCcGGUCGUCAAGCCGaAGCCGg -5'
26530 3' -60 NC_005357.1 + 5212 0.79 0.053892
Target:  5'- uGCUGGCCugcaaccggauacccAGCAGUUCGcGCagUUCGGCCg -3'
miRNA:   3'- cCGGCCGG---------------UCGUCAAGC-CG--AAGCCGG- -5'
26530 3' -60 NC_005357.1 + 23202 0.77 0.070869
Target:  5'- aGGUCGGCCucguCGGUgaauUCGGCcUCGGCCu -3'
miRNA:   3'- -CCGGCCGGuc--GUCA----AGCCGaAGCCGG- -5'
26530 3' -60 NC_005357.1 + 34703 0.76 0.083743
Target:  5'- aGCCGGCCGccgagcgugcgcuGCAGUucaUCGGCaagcCGGCCg -3'
miRNA:   3'- cCGGCCGGU-------------CGUCA---AGCCGaa--GCCGG- -5'
26530 3' -60 NC_005357.1 + 6395 0.76 0.086378
Target:  5'- aGGCCGGCCGGCc---CGGUguagucgCGGCCc -3'
miRNA:   3'- -CCGGCCGGUCGucaaGCCGaa-----GCCGG- -5'
26530 3' -60 NC_005357.1 + 31916 0.75 0.096641
Target:  5'- uGGCCGGCgguCAGCAGUUCGucaagaGCa-CGGCCc -3'
miRNA:   3'- -CCGGCCG---GUCGUCAAGC------CGaaGCCGG- -5'
26530 3' -60 NC_005357.1 + 14133 0.75 0.096641
Target:  5'- cGUCGGCCAGCGGcUUGcCUUCcGGCCg -3'
miRNA:   3'- cCGGCCGGUCGUCaAGCcGAAG-CCGG- -5'
26530 3' -60 NC_005357.1 + 8848 0.75 0.099382
Target:  5'- cGCgGGCCAGCGcgUUGGCcUCGGUCg -3'
miRNA:   3'- cCGgCCGGUCGUcaAGCCGaAGCCGG- -5'
26530 3' -60 NC_005357.1 + 7265 0.75 0.108051
Target:  5'- cGCCGGCCuuguGCAGcuucUCGGCggUGGUCg -3'
miRNA:   3'- cCGGCCGGu---CGUCa---AGCCGaaGCCGG- -5'
26530 3' -60 NC_005357.1 + 612 0.74 0.110479
Target:  5'- gGGUCGGCCAGCAGcgccguggacaCGGCgucCGGCg -3'
miRNA:   3'- -CCGGCCGGUCGUCaa---------GCCGaa-GCCGg -5'
26530 3' -60 NC_005357.1 + 12303 0.74 0.114219
Target:  5'- aGGCCGG-CGGCGuGUUCuGGCg-CGGCCu -3'
miRNA:   3'- -CCGGCCgGUCGU-CAAG-CCGaaGCCGG- -5'
26530 3' -60 NC_005357.1 + 22983 0.74 0.117425
Target:  5'- aGCCGGUCGGa--UUCGGCUuucgccuggUCGGCCu -3'
miRNA:   3'- cCGGCCGGUCgucAAGCCGA---------AGCCGG- -5'
26530 3' -60 NC_005357.1 + 33609 0.73 0.130386
Target:  5'- cGGCUGGCCcgacccAGCAGaUCGGUacugaccggcgCGGCCg -3'
miRNA:   3'- -CCGGCCGG------UCGUCaAGCCGaa---------GCCGG- -5'
26530 3' -60 NC_005357.1 + 5100 0.73 0.138483
Target:  5'- cGGCCGGcCCAGCguccGGUgCGGCUggcGCCg -3'
miRNA:   3'- -CCGGCC-GGUCG----UCAaGCCGAagcCGG- -5'
26530 3' -60 NC_005357.1 + 1762 0.73 0.142314
Target:  5'- uGGCCGGCCuGCGcc-UGGCgcgUCgGGCCg -3'
miRNA:   3'- -CCGGCCGGuCGUcaaGCCGa--AG-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.