miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26530 3' -60 NC_005357.1 + 403 0.71 0.186253
Target:  5'- cGCCcaCCAGCAGcaCGGCggugaucgUCGGCCg -3'
miRNA:   3'- cCGGccGGUCGUCaaGCCGa-------AGCCGG- -5'
26530 3' -60 NC_005357.1 + 514 0.68 0.295486
Target:  5'- cGG-CGGCUuGCAGg-CGGUucugUUCGGCCg -3'
miRNA:   3'- -CCgGCCGGuCGUCaaGCCG----AAGCCGG- -5'
26530 3' -60 NC_005357.1 + 612 0.74 0.110479
Target:  5'- gGGUCGGCCAGCAGcgccguggacaCGGCgucCGGCg -3'
miRNA:   3'- -CCGGCCGGUCGUCaa---------GCCGaa-GCCGg -5'
26530 3' -60 NC_005357.1 + 1101 0.7 0.218041
Target:  5'- uGGCCGuGUCGcGCGGcaugUCGcGCaUCGGCCc -3'
miRNA:   3'- -CCGGC-CGGU-CGUCa---AGC-CGaAGCCGG- -5'
26530 3' -60 NC_005357.1 + 1462 0.69 0.281225
Target:  5'- cGGCgCGGUCGGCGGccuccUGGCa--GGCCg -3'
miRNA:   3'- -CCG-GCCGGUCGUCaa---GCCGaagCCGG- -5'
26530 3' -60 NC_005357.1 + 1531 0.79 0.047499
Target:  5'- cGCCGcCCAGCAGUUCGGCcUUGGUa -3'
miRNA:   3'- cCGGCcGGUCGUCAAGCCGaAGCCGg -5'
26530 3' -60 NC_005357.1 + 1762 0.73 0.142314
Target:  5'- uGGCCGGCCuGCGcc-UGGCgcgUCgGGCCg -3'
miRNA:   3'- -CCGGCCGGuCGUcaaGCCGa--AG-CCGG- -5'
26530 3' -60 NC_005357.1 + 2248 0.67 0.349787
Target:  5'- gGGCCuuGGCCGGCAGUUCGa---CGcGCa -3'
miRNA:   3'- -CCGG--CCGGUCGUCAAGCcgaaGC-CGg -5'
26530 3' -60 NC_005357.1 + 2588 0.69 0.260867
Target:  5'- aGCUugcaaGGCCAGCAGgUUGGCga-GGUCg -3'
miRNA:   3'- cCGG-----CCGGUCGUCaAGCCGaagCCGG- -5'
26530 3' -60 NC_005357.1 + 4040 0.72 0.154393
Target:  5'- aGCCGGCC-GCGGcgagCGGCa--GGCCa -3'
miRNA:   3'- cCGGCCGGuCGUCaa--GCCGaagCCGG- -5'
26530 3' -60 NC_005357.1 + 4093 0.82 0.032074
Target:  5'- aGGCCGGCCAGguGggCGGCgcugaauucgucgCGGUCg -3'
miRNA:   3'- -CCGGCCGGUCguCaaGCCGaa-----------GCCGG- -5'
26530 3' -60 NC_005357.1 + 4205 0.69 0.260867
Target:  5'- uGGCC-GCgAGCAcGUcgCGGCUUgCGGCUu -3'
miRNA:   3'- -CCGGcCGgUCGU-CAa-GCCGAA-GCCGG- -5'
26530 3' -60 NC_005357.1 + 4261 0.66 0.401708
Target:  5'- uGCCGGCCGuCAGcgcCGGCauggugaUGGCCg -3'
miRNA:   3'- cCGGCCGGUcGUCaa-GCCGaa-----GCCGG- -5'
26530 3' -60 NC_005357.1 + 4363 0.69 0.276365
Target:  5'- cGGCCGGaCGGCAGgcggaugcgcagccaGGCgccgUCGcGCCg -3'
miRNA:   3'- -CCGGCCgGUCGUCaag------------CCGa---AGC-CGG- -5'
26530 3' -60 NC_005357.1 + 4801 0.67 0.349787
Target:  5'- cGCCGGCUGGCGcugCGGgaUugcUGGCCg -3'
miRNA:   3'- cCGGCCGGUCGUcaaGCCgaA---GCCGG- -5'
26530 3' -60 NC_005357.1 + 4884 0.67 0.341611
Target:  5'- aGCgCGGCgaCGGCGGccUCGuuUUCGGCCa -3'
miRNA:   3'- cCG-GCCG--GUCGUCa-AGCcgAAGCCGG- -5'
26530 3' -60 NC_005357.1 + 5100 0.73 0.138483
Target:  5'- cGGCCGGcCCAGCguccGGUgCGGCUggcGCCg -3'
miRNA:   3'- -CCGGCC-GGUCG----UCAaGCCGAagcCGG- -5'
26530 3' -60 NC_005357.1 + 5212 0.79 0.053892
Target:  5'- uGCUGGCCugcaaccggauacccAGCAGUUCGcGCagUUCGGCCg -3'
miRNA:   3'- cCGGCCGG---------------UCGUCAAGC-CG--AAGCCGG- -5'
26530 3' -60 NC_005357.1 + 5266 0.67 0.366553
Target:  5'- -aCCGGCCAccguGUugauGUucgCGGCguugUCGGCCa -3'
miRNA:   3'- ccGGCCGGU----CGu---CAa--GCCGa---AGCCGG- -5'
26530 3' -60 NC_005357.1 + 5715 0.68 0.287574
Target:  5'- cGCCagaaaugggGGCCuGCacGGUUCGGCUaaguuugUCGGCg -3'
miRNA:   3'- cCGG---------CCGGuCG--UCAAGCCGA-------AGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.