miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26530 3' -60 NC_005357.1 + 7432 1.12 0.000138
Target:  5'- uGGCCGGCCAGCAGUUCGGCUUCGGCCu -3'
miRNA:   3'- -CCGGCCGGUCGUCAAGCCGAAGCCGG- -5'
26530 3' -60 NC_005357.1 + 23344 0.69 0.254353
Target:  5'- aGGCCGGCCuGCAa-UCGcGUgaccUCGGCg -3'
miRNA:   3'- -CCGGCCGGuCGUcaAGC-CGa---AGCCGg -5'
26530 3' -60 NC_005357.1 + 4205 0.69 0.260867
Target:  5'- uGGCC-GCgAGCAcGUcgCGGCUUgCGGCUu -3'
miRNA:   3'- -CCGGcCGgUCGU-CAa-GCCGAA-GCCGG- -5'
26530 3' -60 NC_005357.1 + 36044 0.66 0.429441
Target:  5'- gGGCCGGCCGGCcug-CGcCUgauugccgacgUgGGCCg -3'
miRNA:   3'- -CCGGCCGGUCGucaaGCcGA-----------AgCCGG- -5'
26530 3' -60 NC_005357.1 + 7265 0.75 0.108051
Target:  5'- cGCCGGCCuuguGCAGcuucUCGGCggUGGUCg -3'
miRNA:   3'- cCGGCCGGu---CGUCa---AGCCGaaGCCGG- -5'
26530 3' -60 NC_005357.1 + 12303 0.74 0.114219
Target:  5'- aGGCCGG-CGGCGuGUUCuGGCg-CGGCCu -3'
miRNA:   3'- -CCGGCCgGUCGU-CAAG-CCGaaGCCGG- -5'
26530 3' -60 NC_005357.1 + 5100 0.73 0.138483
Target:  5'- cGGCCGGcCCAGCguccGGUgCGGCUggcGCCg -3'
miRNA:   3'- -CCGGCC-GGUCG----UCAaGCCGAagcCGG- -5'
26530 3' -60 NC_005357.1 + 1762 0.73 0.142314
Target:  5'- uGGCCGGCCuGCGcc-UGGCgcgUCgGGCCg -3'
miRNA:   3'- -CCGGCCGGuCGUcaaGCCGa--AG-CCGG- -5'
26530 3' -60 NC_005357.1 + 28897 0.72 0.167395
Target:  5'- aGG-CGGCCGaCAGUUCGGCgcggaCGGCa -3'
miRNA:   3'- -CCgGCCGGUcGUCAAGCCGaa---GCCGg -5'
26530 3' -60 NC_005357.1 + 12418 0.69 0.254353
Target:  5'- gGGCgCGGCCGuGCAGUUgGaGCacgaUGGCCc -3'
miRNA:   3'- -CCG-GCCGGU-CGUCAAgC-CGaa--GCCGG- -5'
26530 3' -60 NC_005357.1 + 24152 0.71 0.180888
Target:  5'- cGGCCcgcugacGGCCGGCaAGUucUCGGCgcaGGUCg -3'
miRNA:   3'- -CCGG-------CCGGUCG-UCA--AGCCGaagCCGG- -5'
26530 3' -60 NC_005357.1 + 4040 0.72 0.154393
Target:  5'- aGCCGGCC-GCGGcgagCGGCa--GGCCa -3'
miRNA:   3'- cCGGCCGGuCGUCaa--GCCGaagCCGG- -5'
26530 3' -60 NC_005357.1 + 4093 0.82 0.032074
Target:  5'- aGGCCGGCCAGguGggCGGCgcugaauucgucgCGGUCg -3'
miRNA:   3'- -CCGGCCGGUCguCaaGCCGaa-----------GCCGG- -5'
26530 3' -60 NC_005357.1 + 9507 0.71 0.18137
Target:  5'- uGGCCGaacaGCCAGCcGUgcaGGCcgUGGCCg -3'
miRNA:   3'- -CCGGC----CGGUCGuCAag-CCGaaGCCGG- -5'
26530 3' -60 NC_005357.1 + 5212 0.79 0.053892
Target:  5'- uGCUGGCCugcaaccggauacccAGCAGUUCGcGCagUUCGGCCg -3'
miRNA:   3'- cCGGCCGG---------------UCGUCAAGC-CG--AAGCCGG- -5'
26530 3' -60 NC_005357.1 + 19598 0.73 0.150267
Target:  5'- uGUCGGCUgucGGCAGcgCGGCgaagUCgGGCCa -3'
miRNA:   3'- cCGGCCGG---UCGUCaaGCCGa---AG-CCGG- -5'
26530 3' -60 NC_005357.1 + 6181 0.7 0.244209
Target:  5'- aGGCCGGUCuugccgcagcguuuGCAGgugaCGGCgcgCGGCUc -3'
miRNA:   3'- -CCGGCCGGu-------------CGUCaa--GCCGaa-GCCGG- -5'
26530 3' -60 NC_005357.1 + 17692 0.69 0.260867
Target:  5'- gGGUCgaGGCCGcGCAGgcgCGGUggaagCGGCCc -3'
miRNA:   3'- -CCGG--CCGGU-CGUCaa-GCCGaa---GCCGG- -5'
26530 3' -60 NC_005357.1 + 31916 0.75 0.096641
Target:  5'- uGGCCGGCgguCAGCAGUUCGucaagaGCa-CGGCCc -3'
miRNA:   3'- -CCGGCCG---GUCGUCAAGC------CGaaGCCGG- -5'
26530 3' -60 NC_005357.1 + 33609 0.73 0.130386
Target:  5'- cGGCUGGCCcgacccAGCAGaUCGGUacugaccggcgCGGCCg -3'
miRNA:   3'- -CCGGCCGG------UCGUCaAGCCGaa---------GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.