Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26531 | 3' | -60.2 | NC_005357.1 | + | 400 | 0.69 | 0.233935 |
Target: 5'- gGGCGCCCACCaGCAgcacggcgguGAUCGU-CGGCc- -3' miRNA: 3'- -UUGCGGGUGG-CGU----------CUAGCAgGCCGua -5' |
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26531 | 3' | -60.2 | NC_005357.1 | + | 621 | 0.66 | 0.325355 |
Target: 5'- --aGCagCGCCGUGGAcacggCGUCCGGCGUc -3' miRNA: 3'- uugCGg-GUGGCGUCUa----GCAGGCCGUA- -5' |
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26531 | 3' | -60.2 | NC_005357.1 | + | 1168 | 0.66 | 0.341573 |
Target: 5'- cACGCCCcacauagucucGCCGCcgGGGUCGgCCGGguUg -3' miRNA: 3'- uUGCGGG-----------UGGCG--UCUAGCaGGCCguA- -5' |
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26531 | 3' | -60.2 | NC_005357.1 | + | 5897 | 1.02 | 0.000586 |
Target: 5'- cAACGCCCACCGCAGAUCGUCCGGCAUc -3' miRNA: 3'- -UUGCGGGUGGCGUCUAGCAGGCCGUA- -5' |
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26531 | 3' | -60.2 | NC_005357.1 | + | 10280 | 0.68 | 0.273149 |
Target: 5'- gGAUGCCC--UGUAGGUCGUCCaGCAc -3' miRNA: 3'- -UUGCGGGugGCGUCUAGCAGGcCGUa -5' |
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26531 | 3' | -60.2 | NC_005357.1 | + | 10989 | 0.68 | 0.252917 |
Target: 5'- cGAUGaCCaCGCCGCAGAUCGU--GGCGUc -3' miRNA: 3'- -UUGC-GG-GUGGCGUCUAGCAggCCGUA- -5' |
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26531 | 3' | -60.2 | NC_005357.1 | + | 12352 | 0.67 | 0.309717 |
Target: 5'- uGGCGCCCgggcGCCGCacaaaGGAUauuUCCGGCAc -3' miRNA: 3'- -UUGCGGG----UGGCG-----UCUAgc-AGGCCGUa -5' |
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26531 | 3' | -60.2 | NC_005357.1 | + | 13289 | 0.68 | 0.266264 |
Target: 5'- cAGCGCCgAUUGCAGcgCGccggggCCGGCGUu -3' miRNA: 3'- -UUGCGGgUGGCGUCuaGCa-----GGCCGUA- -5' |
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26531 | 3' | -60.2 | NC_005357.1 | + | 13385 | 0.66 | 0.341573 |
Target: 5'- cAUGCCCAgCGCGcGGUUGUaggCGGCAUc -3' miRNA: 3'- uUGCGGGUgGCGU-CUAGCAg--GCCGUA- -5' |
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26531 | 3' | -60.2 | NC_005357.1 | + | 20438 | 0.7 | 0.199562 |
Target: 5'- uGCGCCaguaGCCGCAGGcccUCGuUCCGGUu- -3' miRNA: 3'- uUGCGGg---UGGCGUCU---AGC-AGGCCGua -5' |
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26531 | 3' | -60.2 | NC_005357.1 | + | 23434 | 0.67 | 0.280175 |
Target: 5'- cGACGCCgGCCgggauGCGGAUgGUUCGcGCGUa -3' miRNA: 3'- -UUGCGGgUGG-----CGUCUAgCAGGC-CGUA- -5' |
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26531 | 3' | -60.2 | NC_005357.1 | + | 24160 | 0.67 | 0.317464 |
Target: 5'- uGACgGCCgGCaaguucucggCGCAGGUCGUgaCCGGCAUc -3' miRNA: 3'- -UUG-CGGgUG----------GCGUCUAGCA--GGCCGUA- -5' |
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26531 | 3' | -60.2 | NC_005357.1 | + | 24578 | 0.67 | 0.294658 |
Target: 5'- -cCGgCCACgGuCGGGcCGUCCGGCGUg -3' miRNA: 3'- uuGCgGGUGgC-GUCUaGCAGGCCGUA- -5' |
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26531 | 3' | -60.2 | NC_005357.1 | + | 24672 | 0.72 | 0.12478 |
Target: 5'- cGCGCCCGCCGCGGGccaCGUCCacgcccaGGCu- -3' miRNA: 3'- uUGCGGGUGGCGUCUa--GCAGG-------CCGua -5' |
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26531 | 3' | -60.2 | NC_005357.1 | + | 25830 | 0.66 | 0.349898 |
Target: 5'- cGGCGCcaacaCCAUCGCGuGGucggccUCGUCCGGCGc -3' miRNA: 3'- -UUGCG-----GGUGGCGU-CU------AGCAGGCCGUa -5' |
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26531 | 3' | -60.2 | NC_005357.1 | + | 27435 | 0.66 | 0.366978 |
Target: 5'- cGCGCCCggcgGCCGCAGGcccuggCG-CUGGUAUg -3' miRNA: 3'- uUGCGGG----UGGCGUCUa-----GCaGGCCGUA- -5' |
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26531 | 3' | -60.2 | NC_005357.1 | + | 27831 | 0.69 | 0.216164 |
Target: 5'- cGACGCaCUGCUgaaaaGCGGAUCGgccgCCGGCAUc -3' miRNA: 3'- -UUGCG-GGUGG-----CGUCUAGCa---GGCCGUA- -5' |
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26531 | 3' | -60.2 | NC_005357.1 | + | 27998 | 0.66 | 0.366978 |
Target: 5'- -uCGCCCaacacgguGCCGCAGGcgCGcCUGGCGa -3' miRNA: 3'- uuGCGGG--------UGGCGUCUa-GCaGGCCGUa -5' |
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26531 | 3' | -60.2 | NC_005357.1 | + | 28649 | 0.67 | 0.280175 |
Target: 5'- cGCGCgCAgUGcCAGAUCGgugCCGGCGg -3' miRNA: 3'- uUGCGgGUgGC-GUCUAGCa--GGCCGUa -5' |
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26531 | 3' | -60.2 | NC_005357.1 | + | 30746 | 0.69 | 0.230285 |
Target: 5'- --aGUCCGCCGCAGucugacaccuugggcAgugguguuUCGUCCGGCGUa -3' miRNA: 3'- uugCGGGUGGCGUC---------------U--------AGCAGGCCGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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