Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26531 | 3' | -60.2 | NC_005357.1 | + | 33438 | 0.68 | 0.259521 |
Target: 5'- cACGgCCACCGCuGG-CGaaUCCGGCAc -3' miRNA: 3'- uUGCgGGUGGCGuCUaGC--AGGCCGUa -5' |
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26531 | 3' | -60.2 | NC_005357.1 | + | 33486 | 0.68 | 0.259521 |
Target: 5'- cACGgCCACCGCuGG-CGaaUCCGGCAc -3' miRNA: 3'- uUGCgGGUGGCGuCUaGC--AGGCCGUa -5' |
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26531 | 3' | -60.2 | NC_005357.1 | + | 33614 | 0.66 | 0.333392 |
Target: 5'- --gGCCCgACCcaGCAGAUCGguacugaCCGGCGc -3' miRNA: 3'- uugCGGG-UGG--CGUCUAGCa------GGCCGUa -5' |
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26531 | 3' | -60.2 | NC_005357.1 | + | 33704 | 0.66 | 0.325355 |
Target: 5'- cGCGCCCGCCggGCAcAUCuucguGUUCGGCAg -3' miRNA: 3'- uUGCGGGUGG--CGUcUAG-----CAGGCCGUa -5' |
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26531 | 3' | -60.2 | NC_005357.1 | + | 34658 | 0.71 | 0.169672 |
Target: 5'- gGACGCCgGC-GCAGAUCGcgCCGGUg- -3' miRNA: 3'- -UUGCGGgUGgCGUCUAGCa-GGCCGua -5' |
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26531 | 3' | -60.2 | NC_005357.1 | + | 35013 | 0.66 | 0.339925 |
Target: 5'- gGGCGCCCGCUGCucuauacccUGUCCGGUc- -3' miRNA: 3'- -UUGCGGGUGGCGucua-----GCAGGCCGua -5' |
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26531 | 3' | -60.2 | NC_005357.1 | + | 39688 | 0.66 | 0.333392 |
Target: 5'- cACGCCCgagcagcgccggGCCGCGcucaagCGUCCGGCc- -3' miRNA: 3'- uUGCGGG------------UGGCGUcua---GCAGGCCGua -5' |
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26531 | 3' | -60.2 | NC_005357.1 | + | 41600 | 0.66 | 0.325355 |
Target: 5'- -cUGCCCACCugGCcGA-CGUUCGGCAa -3' miRNA: 3'- uuGCGGGUGG--CGuCUaGCAGGCCGUa -5' |
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26531 | 3' | -60.2 | NC_005357.1 | + | 42221 | 0.66 | 0.366978 |
Target: 5'- uGCGCCaguuCGCCGU--GUCGcCCGGCAg -3' miRNA: 3'- uUGCGG----GUGGCGucUAGCaGGCCGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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