Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26535 | 5' | -58.6 | NC_005357.1 | + | 8628 | 0.69 | 0.294658 |
Target: 5'- uCGGCcgcuGCGGUggCGAGGuCGC-CGGCc- -3' miRNA: 3'- -GCCGu---UGCCAa-GCUCC-GCGuGCCGua -5' |
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26535 | 5' | -58.6 | NC_005357.1 | + | 9062 | 0.69 | 0.309717 |
Target: 5'- uCGGCcACGGUaUCGGGGUGCAuccccucacUGGCc- -3' miRNA: 3'- -GCCGuUGCCA-AGCUCCGCGU---------GCCGua -5' |
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26535 | 5' | -58.6 | NC_005357.1 | + | 34385 | 0.68 | 0.317464 |
Target: 5'- uCGaGCAGCGGUugagcgUCGAGGCuGuCAcCGGCGa -3' miRNA: 3'- -GC-CGUUGCCA------AGCUCCG-C-GU-GCCGUa -5' |
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26535 | 5' | -58.6 | NC_005357.1 | + | 9320 | 0.68 | 0.325355 |
Target: 5'- uGGCGGCGcacgUCGGcgcGGCGgGCGGCGg -3' miRNA: 3'- gCCGUUGCca--AGCU---CCGCgUGCCGUa -5' |
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26535 | 5' | -58.6 | NC_005357.1 | + | 26680 | 0.7 | 0.265583 |
Target: 5'- gCGGCAacgagguGCGGUaugUCGA-GCGCAUGGCc- -3' miRNA: 3'- -GCCGU-------UGCCA---AGCUcCGCGUGCCGua -5' |
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26535 | 5' | -58.6 | NC_005357.1 | + | 17687 | 0.7 | 0.266264 |
Target: 5'- -aGCAugGG-UCGAGGcCGCGCaGGCGc -3' miRNA: 3'- gcCGUugCCaAGCUCC-GCGUG-CCGUa -5' |
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26535 | 5' | -58.6 | NC_005357.1 | + | 34795 | 0.69 | 0.283026 |
Target: 5'- cCGGCGugGG-UCGAGccGCGCccccugaccaucaccACGGCAg -3' miRNA: 3'- -GCCGUugCCaAGCUC--CGCG---------------UGCCGUa -5' |
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26535 | 5' | -58.6 | NC_005357.1 | + | 15127 | 0.69 | 0.302115 |
Target: 5'- gGGCgucGugGGaagccUUCGccaAGGCGCGCGGCGa -3' miRNA: 3'- gCCG---UugCC-----AAGC---UCCGCGUGCCGUa -5' |
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26535 | 5' | -58.6 | NC_005357.1 | + | 15282 | 0.69 | 0.309717 |
Target: 5'- -nGCGugGGggacUUCGAGugauGCGCGCGGCGUc -3' miRNA: 3'- gcCGUugCC----AAGCUC----CGCGUGCCGUA- -5' |
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26535 | 5' | -58.6 | NC_005357.1 | + | 28899 | 0.68 | 0.317464 |
Target: 5'- gCGGcCGACaGUUCGGcGCGgACGGCAa -3' miRNA: 3'- -GCC-GUUGcCAAGCUcCGCgUGCCGUa -5' |
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26535 | 5' | -58.6 | NC_005357.1 | + | 34256 | 0.68 | 0.325355 |
Target: 5'- cCGGCAGCa--UCcGGGCGCACGcGCAg -3' miRNA: 3'- -GCCGUUGccaAGcUCCGCGUGC-CGUa -5' |
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26535 | 5' | -58.6 | NC_005357.1 | + | 10099 | 0.7 | 0.259521 |
Target: 5'- gGGCGGCGGUugUCGGGaCGC-CGGCc- -3' miRNA: 3'- gCCGUUGCCA--AGCUCcGCGuGCCGua -5' |
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26535 | 5' | -58.6 | NC_005357.1 | + | 14616 | 0.7 | 0.252917 |
Target: 5'- gGGCAGCGcGcgCGAGGacgugcugcggcUGCGCGGCGc -3' miRNA: 3'- gCCGUUGC-CaaGCUCC------------GCGUGCCGUa -5' |
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26535 | 5' | -58.6 | NC_005357.1 | + | 38952 | 0.7 | 0.249022 |
Target: 5'- gGGCcgucguucucguucGCGuucUUCGGGGCGCGCGGCGUc -3' miRNA: 3'- gCCGu-------------UGCc--AAGCUCCGCGUGCCGUA- -5' |
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26535 | 5' | -58.6 | NC_005357.1 | + | 38799 | 0.71 | 0.227878 |
Target: 5'- gGGUAACGaGUUCGGcGGCGUgaAUGGCGc -3' miRNA: 3'- gCCGUUGC-CAAGCU-CCGCG--UGCCGUa -5' |
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26535 | 5' | -58.6 | NC_005357.1 | + | 39508 | 0.71 | 0.221955 |
Target: 5'- gGGCcgucgaacucgAACGcGaacaUCGGGGCGCGCGGCGUc -3' miRNA: 3'- gCCG-----------UUGC-Ca---AGCUCCGCGUGCCGUA- -5' |
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26535 | 5' | -58.6 | NC_005357.1 | + | 32420 | 0.72 | 0.179162 |
Target: 5'- gGGCGGgGGc-CG-GGCGCGCGGCAc -3' miRNA: 3'- gCCGUUgCCaaGCuCCGCGUGCCGUa -5' |
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26535 | 5' | -58.6 | NC_005357.1 | + | 18271 | 0.72 | 0.17436 |
Target: 5'- gCGcGCAGCcg-UCGAGGCGCugGGCc- -3' miRNA: 3'- -GC-CGUUGccaAGCUCCGCGugCCGua -5' |
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26535 | 5' | -58.6 | NC_005357.1 | + | 15250 | 0.74 | 0.136074 |
Target: 5'- gCGGCAAgGGUcgUCGAGGCauccgcGUGCGGCGc -3' miRNA: 3'- -GCCGUUgCCA--AGCUCCG------CGUGCCGUa -5' |
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26535 | 5' | -58.6 | NC_005357.1 | + | 38549 | 0.66 | 0.460541 |
Target: 5'- gCGGCGACGGcagCGcGGCcuacaGCgACGGCGc -3' miRNA: 3'- -GCCGUUGCCaa-GCuCCG-----CG-UGCCGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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