miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26535 5' -58.6 NC_005357.1 + 41960 0.66 0.431115
Target:  5'- uGGCGAUuGUcgaagCGGuGGUGCGCGGCGa -3'
miRNA:   3'- gCCGUUGcCAa----GCU-CCGCGUGCCGUa -5'
26535 5' -58.6 NC_005357.1 + 26199 0.68 0.349059
Target:  5'- uGGCuuCGGUguaggUCGAGGCGUuuuucauGCGcGCAg -3'
miRNA:   3'- gCCGuuGCCA-----AGCUCCGCG-------UGC-CGUa -5'
26535 5' -58.6 NC_005357.1 + 2409 0.67 0.37573
Target:  5'- gGGCGGCaag-CGuAGGUGUACGGCAg -3'
miRNA:   3'- gCCGUUGccaaGC-UCCGCGUGCCGUa -5'
26535 5' -58.6 NC_005357.1 + 22071 0.67 0.393653
Target:  5'- gGGUcGCGGUc---GGCGCGCGGCu- -3'
miRNA:   3'- gCCGuUGCCAagcuCCGCGUGCCGua -5'
26535 5' -58.6 NC_005357.1 + 18456 0.67 0.393653
Target:  5'- -cGUGACGG-UCGcGGCGCcgGCGGCGUc -3'
miRNA:   3'- gcCGUUGCCaAGCuCCGCG--UGCCGUA- -5'
26535 5' -58.6 NC_005357.1 + 7622 0.67 0.40282
Target:  5'- uGGUGAUGG-UCaGGGgGCGCGGCu- -3'
miRNA:   3'- gCCGUUGCCaAGcUCCgCGUGCCGua -5'
26535 5' -58.6 NC_005357.1 + 5475 0.67 0.412121
Target:  5'- gCGGCGAgGuGUUgccgaUGGGGgGUACGGCGa -3'
miRNA:   3'- -GCCGUUgC-CAA-----GCUCCgCGUGCCGUa -5'
26535 5' -58.6 NC_005357.1 + 13418 0.66 0.431115
Target:  5'- gCGGUAACGGUUCucGuCcCACGGCAg -3'
miRNA:   3'- -GCCGUUGCCAAGcuCcGcGUGCCGUa -5'
26535 5' -58.6 NC_005357.1 + 35935 0.66 0.431115
Target:  5'- aCGGCaAGCGcGUgaaugCG-GGCcuGCGCGGCGUg -3'
miRNA:   3'- -GCCG-UUGC-CAa----GCuCCG--CGUGCCGUA- -5'
26535 5' -58.6 NC_005357.1 + 33162 0.68 0.333392
Target:  5'- gGGCGAUGGUggaguugCGgaaguGGGCGCccuCGGCAc -3'
miRNA:   3'- gCCGUUGCCAa------GC-----UCCGCGu--GCCGUa -5'
26535 5' -58.6 NC_005357.1 + 9320 0.68 0.325355
Target:  5'- uGGCGGCGcacgUCGGcgcGGCGgGCGGCGg -3'
miRNA:   3'- gCCGUUGCca--AGCU---CCGCgUGCCGUa -5'
26535 5' -58.6 NC_005357.1 + 34385 0.68 0.317464
Target:  5'- uCGaGCAGCGGUugagcgUCGAGGCuGuCAcCGGCGa -3'
miRNA:   3'- -GC-CGUUGCCA------AGCUCCG-C-GU-GCCGUa -5'
26535 5' -58.6 NC_005357.1 + 28056 0.72 0.183585
Target:  5'- uCGGCGACGGUcugcUCGAacagcgggcagguGGC-CGCGGCGUc -3'
miRNA:   3'- -GCCGUUGCCA----AGCU-------------CCGcGUGCCGUA- -5'
26535 5' -58.6 NC_005357.1 + 25776 0.72 0.189121
Target:  5'- gCGGCAACGauggccgCGAuGCGCGCGGCGc -3'
miRNA:   3'- -GCCGUUGCcaa----GCUcCGCGUGCCGUa -5'
26535 5' -58.6 NC_005357.1 + 28747 0.72 0.199029
Target:  5'- uGGCAucguccagcGCGGUgcgcuucUCGGcGCGCACGGCGUc -3'
miRNA:   3'- gCCGU---------UGCCA-------AGCUcCGCGUGCCGUA- -5'
26535 5' -58.6 NC_005357.1 + 34883 0.72 0.199562
Target:  5'- uGGCGccGCGGaUCGAGcacgccgccgaGCGCACGGUAg -3'
miRNA:   3'- gCCGU--UGCCaAGCUC-----------CGCGUGCCGUa -5'
26535 5' -58.6 NC_005357.1 + 6254 0.71 0.221955
Target:  5'- cCGGUAACGGUgcggUUGAucuGcGCGCugGGCAg -3'
miRNA:   3'- -GCCGUUGCCA----AGCU---C-CGCGugCCGUa -5'
26535 5' -58.6 NC_005357.1 + 19331 0.69 0.280175
Target:  5'- aGGC-GCGGUcuUCGgacAGGCGCcagGCGGCGg -3'
miRNA:   3'- gCCGuUGCCA--AGC---UCCGCG---UGCCGUa -5'
26535 5' -58.6 NC_005357.1 + 8628 0.69 0.294658
Target:  5'- uCGGCcgcuGCGGUggCGAGGuCGC-CGGCc- -3'
miRNA:   3'- -GCCGu---UGCCAa-GCUCC-GCGuGCCGua -5'
26535 5' -58.6 NC_005357.1 + 9062 0.69 0.309717
Target:  5'- uCGGCcACGGUaUCGGGGUGCAuccccucacUGGCc- -3'
miRNA:   3'- -GCCGuUGCCA-AGCUCCGCGU---------GCCGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.