miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26535 5' -58.6 NC_005357.1 + 2371 1.06 0.000475
Target:  5'- aCGGCAACGGUUCGAGGCGCACGGCAUg -3'
miRNA:   3'- -GCCGUUGCCAAGCUCCGCGUGCCGUA- -5'
26535 5' -58.6 NC_005357.1 + 2409 0.67 0.37573
Target:  5'- gGGCGGCaag-CGuAGGUGUACGGCAg -3'
miRNA:   3'- gCCGUUGccaaGC-UCCGCGUGCCGUa -5'
26535 5' -58.6 NC_005357.1 + 5475 0.67 0.412121
Target:  5'- gCGGCGAgGuGUUgccgaUGGGGgGUACGGCGa -3'
miRNA:   3'- -GCCGUUgC-CAA-----GCUCCgCGUGCCGUa -5'
26535 5' -58.6 NC_005357.1 + 6254 0.71 0.221955
Target:  5'- cCGGUAACGGUgcggUUGAucuGcGCGCugGGCAg -3'
miRNA:   3'- -GCCGUUGCCA----AGCU---C-CGCGugCCGUa -5'
26535 5' -58.6 NC_005357.1 + 6598 0.66 0.440803
Target:  5'- gGGCuGCGGUcuuugUCGAugaccagcgGGCGCGUGGCGc -3'
miRNA:   3'- gCCGuUGCCA-----AGCU---------CCGCGUGCCGUa -5'
26535 5' -58.6 NC_005357.1 + 6875 0.66 0.440803
Target:  5'- uGGCcucgaacagAACGGggaaagCGAGGCGCACGuuGUu -3'
miRNA:   3'- gCCG---------UUGCCaa----GCUCCGCGUGCcgUA- -5'
26535 5' -58.6 NC_005357.1 + 7597 0.67 0.384622
Target:  5'- uCGGCGACGGUggacagcaCGuGGuCGCGCaGCGc -3'
miRNA:   3'- -GCCGUUGCCAa-------GCuCC-GCGUGcCGUa -5'
26535 5' -58.6 NC_005357.1 + 7622 0.67 0.40282
Target:  5'- uGGUGAUGG-UCaGGGgGCGCGGCu- -3'
miRNA:   3'- gCCGUUGCCaAGcUCCgCGUGCCGua -5'
26535 5' -58.6 NC_005357.1 + 8413 0.66 0.460541
Target:  5'- gGGCAGCGagcaGUUCGcggGGGCGuCGCGGa-- -3'
miRNA:   3'- gCCGUUGC----CAAGC---UCCGC-GUGCCgua -5'
26535 5' -58.6 NC_005357.1 + 8628 0.69 0.294658
Target:  5'- uCGGCcgcuGCGGUggCGAGGuCGC-CGGCc- -3'
miRNA:   3'- -GCCGu---UGCCAa-GCUCC-GCGuGCCGua -5'
26535 5' -58.6 NC_005357.1 + 9062 0.69 0.309717
Target:  5'- uCGGCcACGGUaUCGGGGUGCAuccccucacUGGCc- -3'
miRNA:   3'- -GCCGuUGCCA-AGCUCCGCGU---------GCCGua -5'
26535 5' -58.6 NC_005357.1 + 9320 0.68 0.325355
Target:  5'- uGGCGGCGcacgUCGGcgcGGCGgGCGGCGg -3'
miRNA:   3'- gCCGUUGCca--AGCU---CCGCgUGCCGUa -5'
26535 5' -58.6 NC_005357.1 + 9943 0.66 0.421554
Target:  5'- uCGGCcuUGGaUUCG-GGCGCAuCGGCc- -3'
miRNA:   3'- -GCCGuuGCC-AAGCuCCGCGU-GCCGua -5'
26535 5' -58.6 NC_005357.1 + 10099 0.7 0.259521
Target:  5'- gGGCGGCGGUugUCGGGaCGC-CGGCc- -3'
miRNA:   3'- gCCGUUGCCA--AGCUCcGCGuGCCGua -5'
26535 5' -58.6 NC_005357.1 + 10871 0.73 0.14789
Target:  5'- uGGCuuCGGUcggcgCGAuGCGCGCGGCGUa -3'
miRNA:   3'- gCCGuuGCCAa----GCUcCGCGUGCCGUA- -5'
26535 5' -58.6 NC_005357.1 + 13083 0.67 0.40282
Target:  5'- cCGGCgcgUGGUUCGAGGacuugGC-CGGCGa -3'
miRNA:   3'- -GCCGuu-GCCAAGCUCCg----CGuGCCGUa -5'
26535 5' -58.6 NC_005357.1 + 13418 0.66 0.431115
Target:  5'- gCGGUAACGGUUCucGuCcCACGGCAg -3'
miRNA:   3'- -GCCGUUGCCAAGcuCcGcGUGCCGUa -5'
26535 5' -58.6 NC_005357.1 + 14616 0.7 0.252917
Target:  5'- gGGCAGCGcGcgCGAGGacgugcugcggcUGCGCGGCGc -3'
miRNA:   3'- gCCGUUGC-CaaGCUCC------------GCGUGCCGUa -5'
26535 5' -58.6 NC_005357.1 + 14723 0.67 0.37573
Target:  5'- cCGGCGGCGagcCGcugccGGCGCGCGGCc- -3'
miRNA:   3'- -GCCGUUGCcaaGCu----CCGCGUGCCGua -5'
26535 5' -58.6 NC_005357.1 + 15127 0.69 0.302115
Target:  5'- gGGCgucGugGGaagccUUCGccaAGGCGCGCGGCGa -3'
miRNA:   3'- gCCG---UugCC-----AAGC---UCCGCGUGCCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.