miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26536 3' -54.1 NC_005357.1 + 2046 1.14 0.000538
Target:  5'- gCCUCGGCGACGAUGGAUUCAAGGGCCu -3'
miRNA:   3'- -GGAGCCGCUGCUACCUAAGUUCCCGG- -5'
26536 3' -54.1 NC_005357.1 + 4612 0.81 0.114692
Target:  5'- gCCUCGGCGAUGAUgucggcggGGAUgcu-GGGCCa -3'
miRNA:   3'- -GGAGCCGCUGCUA--------CCUAaguuCCCGG- -5'
26536 3' -54.1 NC_005357.1 + 7594 0.74 0.289078
Target:  5'- uCgUCGGCGACGGUGGAcagCAcGuGGUCg -3'
miRNA:   3'- -GgAGCCGCUGCUACCUaa-GUuC-CCGG- -5'
26536 3' -54.1 NC_005357.1 + 10290 0.73 0.344123
Target:  5'- gUUCGGCcuUGAgGGAUUCGGGGGCg -3'
miRNA:   3'- gGAGCCGcuGCUaCCUAAGUUCCCGg -5'
26536 3' -54.1 NC_005357.1 + 633 0.73 0.344123
Target:  5'- gCCUCGGCG-CGGgugaacGGGUcaggCGGGGGCUu -3'
miRNA:   3'- -GGAGCCGCuGCUa-----CCUAa---GUUCCCGG- -5'
26536 3' -54.1 NC_005357.1 + 11385 0.73 0.352576
Target:  5'- aCCUCGGUGGCGAccugaUGGg--CcAGGGUCu -3'
miRNA:   3'- -GGAGCCGCUGCU-----ACCuaaGuUCCCGG- -5'
26536 3' -54.1 NC_005357.1 + 17111 0.73 0.369919
Target:  5'- uCC-CGGCGACGAgcgccGGuggC-AGGGCCg -3'
miRNA:   3'- -GGaGCCGCUGCUa----CCuaaGuUCCCGG- -5'
26536 3' -54.1 NC_005357.1 + 25988 0.72 0.386927
Target:  5'- uCCUCGccggucuGCGGCGuauUGGcgauUUCGAGGGCUu -3'
miRNA:   3'- -GGAGC-------CGCUGCu--ACCu---AAGUUCCCGG- -5'
26536 3' -54.1 NC_005357.1 + 22247 0.71 0.425337
Target:  5'- -gUCGGCcGCGAUGGcguAUUCGccGGCCg -3'
miRNA:   3'- ggAGCCGcUGCUACC---UAAGUucCCGG- -5'
26536 3' -54.1 NC_005357.1 + 6842 0.71 0.454838
Target:  5'- cCCUCGGCGACGGccuuUUCGuaGGCCc -3'
miRNA:   3'- -GGAGCCGCUGCUaccuAAGUucCCGG- -5'
26536 3' -54.1 NC_005357.1 + 26187 0.71 0.454838
Target:  5'- uUUCGGUGGCGAUGGcUUCGGuguaGGUCg -3'
miRNA:   3'- gGAGCCGCUGCUACCuAAGUUc---CCGG- -5'
26536 3' -54.1 NC_005357.1 + 10074 0.71 0.454838
Target:  5'- gCCUCGGCGGCGAccgcagcgaccUGGGcggcgguugUCGGGacgccGGCCu -3'
miRNA:   3'- -GGAGCCGCUGCU-----------ACCUa--------AGUUC-----CCGG- -5'
26536 3' -54.1 NC_005357.1 + 7144 0.7 0.48541
Target:  5'- uCgUCGGCuGCGGccUGGAUgaccAGGGCCg -3'
miRNA:   3'- -GgAGCCGcUGCU--ACCUAagu-UCCCGG- -5'
26536 3' -54.1 NC_005357.1 + 28053 0.7 0.494773
Target:  5'- aCgUCGGCGACGGUcugcucgaacagcGGg--CAGGuGGCCg -3'
miRNA:   3'- -GgAGCCGCUGCUA-------------CCuaaGUUC-CCGG- -5'
26536 3' -54.1 NC_005357.1 + 34523 0.7 0.506326
Target:  5'- cCCUCGGCaa-GAUGGGaggcaAAGGGCa -3'
miRNA:   3'- -GGAGCCGcugCUACCUaag--UUCCCGg -5'
26536 3' -54.1 NC_005357.1 + 30418 0.7 0.527617
Target:  5'- gCUCGGCauGGCGAUGagcgCGggcAGGGCCu -3'
miRNA:   3'- gGAGCCG--CUGCUACcuaaGU---UCCCGG- -5'
26536 3' -54.1 NC_005357.1 + 12544 0.69 0.549233
Target:  5'- aCCUCGGCGuCGGUGaauUUCuugccGGCCu -3'
miRNA:   3'- -GGAGCCGCuGCUACcu-AAGuuc--CCGG- -5'
26536 3' -54.1 NC_005357.1 + 36286 0.69 0.560145
Target:  5'- --aCGGCGGCGAgUGGGUgcugauggAAGGGCa -3'
miRNA:   3'- ggaGCCGCUGCU-ACCUAag------UUCCCGg -5'
26536 3' -54.1 NC_005357.1 + 10601 0.69 0.582139
Target:  5'- uCgUCGGUGAgGGUGcgcaGGUUCAuGGGCUu -3'
miRNA:   3'- -GgAGCCGCUgCUAC----CUAAGUuCCCGG- -5'
26536 3' -54.1 NC_005357.1 + 8447 0.68 0.615426
Target:  5'- -aUCGGCG-CGAUgucGGcgUCGAGGugGCCu -3'
miRNA:   3'- ggAGCCGCuGCUA---CCuaAGUUCC--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.