Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26536 | 3' | -54.1 | NC_005357.1 | + | 327 | 0.66 | 0.747038 |
Target: 5'- aCCgucaGGCuGGCGGUGGcgUCGcgcAGcaGGCCg -3' miRNA: 3'- -GGag--CCG-CUGCUACCuaAGU---UC--CCGG- -5' |
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26536 | 3' | -54.1 | NC_005357.1 | + | 633 | 0.73 | 0.344123 |
Target: 5'- gCCUCGGCG-CGGgugaacGGGUcaggCGGGGGCUu -3' miRNA: 3'- -GGAGCCGCuGCUa-----CCUAa---GUUCCCGG- -5' |
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26536 | 3' | -54.1 | NC_005357.1 | + | 683 | 0.68 | 0.637708 |
Target: 5'- gCCUaCGGCGGCGccGGcc----GGGCCg -3' miRNA: 3'- -GGA-GCCGCUGCuaCCuaaguuCCCGG- -5' |
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26536 | 3' | -54.1 | NC_005357.1 | + | 2046 | 1.14 | 0.000538 |
Target: 5'- gCCUCGGCGACGAUGGAUUCAAGGGCCu -3' miRNA: 3'- -GGAGCCGCUGCUACCUAAGUUCCCGG- -5' |
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26536 | 3' | -54.1 | NC_005357.1 | + | 4612 | 0.81 | 0.114692 |
Target: 5'- gCCUCGGCGAUGAUgucggcggGGAUgcu-GGGCCa -3' miRNA: 3'- -GGAGCCGCUGCUA--------CCUAaguuCCCGG- -5' |
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26536 | 3' | -54.1 | NC_005357.1 | + | 5474 | 0.68 | 0.626565 |
Target: 5'- gCCgCGGuCGuuGAUGGucuggUCGAGGuGCCa -3' miRNA: 3'- -GGaGCC-GCugCUACCua---AGUUCC-CGG- -5' |
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26536 | 3' | -54.1 | NC_005357.1 | + | 6842 | 0.71 | 0.454838 |
Target: 5'- cCCUCGGCGACGGccuuUUCGuaGGCCc -3' miRNA: 3'- -GGAGCCGCUGCUaccuAAGUucCCGG- -5' |
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26536 | 3' | -54.1 | NC_005357.1 | + | 7144 | 0.7 | 0.48541 |
Target: 5'- uCgUCGGCuGCGGccUGGAUgaccAGGGCCg -3' miRNA: 3'- -GgAGCCGcUGCU--ACCUAagu-UCCCGG- -5' |
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26536 | 3' | -54.1 | NC_005357.1 | + | 7594 | 0.74 | 0.289078 |
Target: 5'- uCgUCGGCGACGGUGGAcagCAcGuGGUCg -3' miRNA: 3'- -GgAGCCGCUGCUACCUaa-GUuC-CCGG- -5' |
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26536 | 3' | -54.1 | NC_005357.1 | + | 8241 | 0.68 | 0.637708 |
Target: 5'- cCCUCGuCGGCGAagucgcUGGAaucauccgggcaUUCGgcuuccAGGGCCa -3' miRNA: 3'- -GGAGCcGCUGCU------ACCU------------AAGU------UCCCGG- -5' |
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26536 | 3' | -54.1 | NC_005357.1 | + | 8447 | 0.68 | 0.615426 |
Target: 5'- -aUCGGCG-CGAUgucGGcgUCGAGGugGCCu -3' miRNA: 3'- ggAGCCGCuGCUA---CCuaAGUUCC--CGG- -5' |
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26536 | 3' | -54.1 | NC_005357.1 | + | 8625 | 0.68 | 0.648846 |
Target: 5'- uUCUCGGCcgcuGCGGUGGcgaggUCGccGGCCu -3' miRNA: 3'- -GGAGCCGc---UGCUACCua---AGUucCCGG- -5' |
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26536 | 3' | -54.1 | NC_005357.1 | + | 9312 | 0.67 | 0.668847 |
Target: 5'- --aCGGCGACauucagggccuUGGGUUCAuGGGCg -3' miRNA: 3'- ggaGCCGCUGcu---------ACCUAAGUuCCCGg -5' |
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26536 | 3' | -54.1 | NC_005357.1 | + | 10074 | 0.71 | 0.454838 |
Target: 5'- gCCUCGGCGGCGAccgcagcgaccUGGGcggcgguugUCGGGacgccGGCCu -3' miRNA: 3'- -GGAGCCGCUGCU-----------ACCUa--------AGUUC-----CCGG- -5' |
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26536 | 3' | -54.1 | NC_005357.1 | + | 10290 | 0.73 | 0.344123 |
Target: 5'- gUUCGGCcuUGAgGGAUUCGGGGGCg -3' miRNA: 3'- gGAGCCGcuGCUaCCUAAGUUCCCGg -5' |
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26536 | 3' | -54.1 | NC_005357.1 | + | 10601 | 0.69 | 0.582139 |
Target: 5'- uCgUCGGUGAgGGUGcgcaGGUUCAuGGGCUu -3' miRNA: 3'- -GgAGCCGCUgCUAC----CUAAGUuCCCGG- -5' |
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26536 | 3' | -54.1 | NC_005357.1 | + | 11385 | 0.73 | 0.352576 |
Target: 5'- aCCUCGGUGGCGAccugaUGGg--CcAGGGUCu -3' miRNA: 3'- -GGAGCCGCUGCU-----ACCuaaGuUCCCGG- -5' |
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26536 | 3' | -54.1 | NC_005357.1 | + | 12544 | 0.69 | 0.549233 |
Target: 5'- aCCUCGGCGuCGGUGaauUUCuugccGGCCu -3' miRNA: 3'- -GGAGCCGCuGCUACcu-AAGuuc--CCGG- -5' |
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26536 | 3' | -54.1 | NC_005357.1 | + | 14219 | 0.68 | 0.648846 |
Target: 5'- uCgUCGGCGugGccgaccUGGA--CAAGGcGCCg -3' miRNA: 3'- -GgAGCCGCugCu-----ACCUaaGUUCC-CGG- -5' |
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26536 | 3' | -54.1 | NC_005357.1 | + | 14815 | 0.67 | 0.671064 |
Target: 5'- aCCUCGGCGGCGcUGccUUCGcccAGGucgauGCCg -3' miRNA: 3'- -GGAGCCGCUGCuACcuAAGU---UCC-----CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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