Results 41 - 52 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26538 | 3' | -62.2 | NC_005357.1 | + | 27703 | 0.66 | 0.327482 |
Target: 5'- cCG-CGCGcCGGCAgcGGCuCG-CCGCCGGu -3' miRNA: 3'- -GCaGCGC-GUCGU--CCG-GCaGGCGGUCc -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 29864 | 0.66 | 0.340794 |
Target: 5'- uCGcCGCGCAGCgcgAGGCCGgCaagaaauucaccgaCGCCgAGGu -3' miRNA: 3'- -GCaGCGCGUCG---UCCGGCaG--------------GCGG-UCC- -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 29921 | 0.66 | 0.335265 |
Target: 5'- -uUCGCGCAuCAGuGCCGUggcUUGCCAGu -3' miRNA: 3'- gcAGCGCGUcGUC-CGGCA---GGCGGUCc -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 30290 | 0.68 | 0.244513 |
Target: 5'- gCGgaaGCGCAGCGcguGGCgCGUCgCGCCAa- -3' miRNA: 3'- -GCag-CGCGUCGU---CCG-GCAG-GCGGUcc -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 31835 | 0.69 | 0.199467 |
Target: 5'- --aUGCGguGCAGGCUG-CgCGCCuGGg -3' miRNA: 3'- gcaGCGCguCGUCCGGCaG-GCGGuCC- -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 32355 | 0.66 | 0.327482 |
Target: 5'- gGUCGCuGCGGUcgccgccgAGGCCccggCCGCCcagcAGGa -3' miRNA: 3'- gCAGCG-CGUCG--------UCCGGca--GGCGG----UCC- -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 32516 | 0.71 | 0.145501 |
Target: 5'- --cCGCGCccguGCAGGCUGgugaugCCGgCCAGGa -3' miRNA: 3'- gcaGCGCGu---CGUCCGGCa-----GGC-GGUCC- -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 33673 | 0.67 | 0.266088 |
Target: 5'- cCG-CGCGCaaauuccauguugacGGUAGcGCCGcgcCCGCCGGGc -3' miRNA: 3'- -GCaGCGCG---------------UCGUC-CGGCa--GGCGGUCC- -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 34688 | 0.68 | 0.23845 |
Target: 5'- uCGUCGCcaaCAGCAaGCCGgCCGCCGa- -3' miRNA: 3'- -GCAGCGc--GUCGUcCGGCaGGCGGUcc -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 40666 | 0.69 | 0.189395 |
Target: 5'- cCGaCGCGCcaggcGCAGGCCGgccaugaCCGCCcGGu -3' miRNA: 3'- -GCaGCGCGu----CGUCCGGCa------GGCGGuCC- -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 41740 | 0.66 | 0.335265 |
Target: 5'- -cUUGgGCGGCccGGCCGgcgCCGCCguAGGc -3' miRNA: 3'- gcAGCgCGUCGu-CCGGCa--GGCGG--UCC- -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 42040 | 0.66 | 0.312319 |
Target: 5'- aGUCGCGC-GCuGGCCGcgcucaaUCGgCAGGc -3' miRNA: 3'- gCAGCGCGuCGuCCGGCa------GGCgGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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