Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26538 | 3' | -62.2 | NC_005357.1 | + | 11183 | 0.74 | 0.093991 |
Target: 5'- aCGUCGCccggcucGUAGCuGGGCCG-CgCGCCGGGg -3' miRNA: 3'- -GCAGCG-------CGUCG-UCCGGCaG-GCGGUCC- -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 11439 | 0.69 | 0.191372 |
Target: 5'- gGUCGCGCgugAGCAGaucguccaccgucacGCCGaaguagUCCGCCAGc -3' miRNA: 3'- gCAGCGCG---UCGUC---------------CGGC------AGGCGGUCc -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 12008 | 0.69 | 0.210002 |
Target: 5'- aCGUCGgccaGCAGCGcGGCCGUggCCgGCgAGGu -3' miRNA: 3'- -GCAGCg---CGUCGU-CCGGCA--GG-CGgUCC- -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 12291 | 0.68 | 0.23845 |
Target: 5'- cCGaCGCGguGCAGGCCGgCgGCguGu -3' miRNA: 3'- -GCaGCGCguCGUCCGGCaGgCGguCc -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 13869 | 0.68 | 0.232514 |
Target: 5'- aCGUgCGCGCcGCGauGGCCGgcggCCGCaAGGu -3' miRNA: 3'- -GCA-GCGCGuCGU--CCGGCa---GGCGgUCC- -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 14971 | 0.66 | 0.312319 |
Target: 5'- gCGgCGCGCuGGCauaccagcgccaGGGCCugcggCCGCCGGGc -3' miRNA: 3'- -GCaGCGCG-UCG------------UCCGGca---GGCGGUCC- -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 15386 | 0.67 | 0.270051 |
Target: 5'- gCGUC-CGCGuGCGGGCCGgcgaagaUGCCGGa -3' miRNA: 3'- -GCAGcGCGU-CGUCCGGCag-----GCGGUCc -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 15584 | 0.66 | 0.312319 |
Target: 5'- aCGaCGCGCuGCGGaugcaccgcGCCaUCgGCCAGGa -3' miRNA: 3'- -GCaGCGCGuCGUC---------CGGcAGgCGGUCC- -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 17426 | 0.66 | 0.343183 |
Target: 5'- aCGUCGCccuugaGCAGU-GGCC--CCGCCAGc -3' miRNA: 3'- -GCAGCG------CGUCGuCCGGcaGGCGGUCc -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 18412 | 0.66 | 0.304939 |
Target: 5'- aCGUCgGCGaAGguGGCguUGUCCGCCGa- -3' miRNA: 3'- -GCAG-CGCgUCguCCG--GCAGGCGGUcc -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 19424 | 0.67 | 0.276763 |
Target: 5'- aGgCGCaGCAGCAGGCCGa---CCAGGc -3' miRNA: 3'- gCaGCG-CGUCGUCCGGCaggcGGUCC- -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 21257 | 0.78 | 0.043091 |
Target: 5'- gGcCGCGCAGCAGGCCGcgCUGuugaaCCAGGg -3' miRNA: 3'- gCaGCGCGUCGUCCGGCa-GGC-----GGUCC- -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 21989 | 0.66 | 0.343183 |
Target: 5'- -uUCGCGCAGCgugcGGGUuuCGUCggCGCCuGGc -3' miRNA: 3'- gcAGCGCGUCG----UCCG--GCAG--GCGGuCC- -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 23738 | 0.69 | 0.194374 |
Target: 5'- uCGguggCGCGCAGCAGcgccauGCCGgcgCCaCCGGGc -3' miRNA: 3'- -GCa---GCGCGUCGUC------CGGCa--GGcGGUCC- -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 24552 | 0.74 | 0.09169 |
Target: 5'- gGUCGCGCAGCgcggcgauggcgAGGCCGgccaCgGUCGGGc -3' miRNA: 3'- gCAGCGCGUCG------------UCCGGCa---GgCGGUCC- -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 24669 | 0.72 | 0.120518 |
Target: 5'- uGUCGCGCccgccGCGGGCCacGUCCacgcCCAGGc -3' miRNA: 3'- gCAGCGCGu----CGUCCGG--CAGGc---GGUCC- -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 25301 | 0.72 | 0.132111 |
Target: 5'- gGUCGUGCGGCcGGCCcugccaccggcgcucGUC-GCCGGGa -3' miRNA: 3'- gCAGCGCGUCGuCCGG---------------CAGgCGGUCC- -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 26135 | 0.66 | 0.319833 |
Target: 5'- uCGUCgcggcagauuugGCGCAGCGGcucGCCGUCUGCg--- -3' miRNA: 3'- -GCAG------------CGCGUCGUC---CGGCAGGCGgucc -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 27015 | 0.68 | 0.232514 |
Target: 5'- gGUUGCGCGuGCAucGGUCGUCCGgCAu- -3' miRNA: 3'- gCAGCGCGU-CGU--CCGGCAGGCgGUcc -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 27179 | 0.72 | 0.117293 |
Target: 5'- -uUUGUGCGGCAGGCCGacccUCUGCCGu- -3' miRNA: 3'- gcAGCGCGUCGUCCGGC----AGGCGGUcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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