miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26538 3' -62.2 NC_005357.1 + 345 1.09 0.000181
Target:  5'- gCGUCGCGCAGCAGGCCGUCCGCCAGGc -3'
miRNA:   3'- -GCAGCGCGUCGUCCGGCAGGCGGUCC- -5'
26538 3' -62.2 NC_005357.1 + 1107 0.68 0.226702
Target:  5'- uGUCGCGCGGCAuGUCGcgcaUCgGCCcGGu -3'
miRNA:   3'- gCAGCGCGUCGUcCGGC----AGgCGGuCC- -5'
26538 3' -62.2 NC_005357.1 + 2132 0.66 0.319833
Target:  5'- -aUCGUGCAGCA-GCCGgucaaccgcgCCGCCGu- -3'
miRNA:   3'- gcAGCGCGUCGUcCGGCa---------GGCGGUcc -5'
26538 3' -62.2 NC_005357.1 + 2232 0.68 0.244513
Target:  5'- --aCGCGCAGCAGGCgG--CGCguGGc -3'
miRNA:   3'- gcaGCGCGUCGUCCGgCagGCGguCC- -5'
26538 3' -62.2 NC_005357.1 + 2787 0.69 0.187923
Target:  5'- aCGUUGCGCAGguGcGCCcacuucgucgauucGUCgGgCCAGGu -3'
miRNA:   3'- -GCAGCGCGUCguC-CGG--------------CAGgC-GGUCC- -5'
26538 3' -62.2 NC_005357.1 + 3874 0.66 0.335265
Target:  5'- cCGUCGCu--GUAGGCCGcgCUGCCGu- -3'
miRNA:   3'- -GCAGCGcguCGUCCGGCa-GGCGGUcc -5'
26538 3' -62.2 NC_005357.1 + 4381 0.76 0.062135
Target:  5'- --aUGCGCAGCcaGGcGCCGUCgCGCCGGGc -3'
miRNA:   3'- gcaGCGCGUCG--UC-CGGCAG-GCGGUCC- -5'
26538 3' -62.2 NC_005357.1 + 4414 0.68 0.230757
Target:  5'- aG-CGUGCGGCagucguAGGUCGUacccggccgcaacaCCGCCAGGc -3'
miRNA:   3'- gCaGCGCGUCG------UCCGGCA--------------GGCGGUCC- -5'
26538 3' -62.2 NC_005357.1 + 4528 0.67 0.283606
Target:  5'- aCGUgGCGUgcugGGC-GGUCGUgCCGCCGcGGa -3'
miRNA:   3'- -GCAgCGCG----UCGuCCGGCA-GGCGGU-CC- -5'
26538 3' -62.2 NC_005357.1 + 5240 0.68 0.23845
Target:  5'- -uUCGCGCAGUucGGCCGgCagGUCGGGg -3'
miRNA:   3'- gcAGCGCGUCGu-CCGGCaGg-CGGUCC- -5'
26538 3' -62.2 NC_005357.1 + 5334 0.67 0.276763
Target:  5'- aCGUgGCGCAGCAuGGCauCGcgCUGCguGGc -3'
miRNA:   3'- -GCAgCGCGUCGU-CCG--GCa-GGCGguCC- -5'
26538 3' -62.2 NC_005357.1 + 5751 0.67 0.297694
Target:  5'- ---aGCGCGcCGGGCagcgaGUgCGCCAGGg -3'
miRNA:   3'- gcagCGCGUcGUCCGg----CAgGCGGUCC- -5'
26538 3' -62.2 NC_005357.1 + 5896 0.7 0.166152
Target:  5'- gGUCGC-CAGCGuGGUgagUGUgCCGCCGGGa -3'
miRNA:   3'- gCAGCGcGUCGU-CCG---GCA-GGCGGUCC- -5'
26538 3' -62.2 NC_005357.1 + 6377 0.67 0.282916
Target:  5'- aCGUCG-GCAaucaggcGCAGGCCGgCCgGCCcGGu -3'
miRNA:   3'- -GCAGCgCGU-------CGUCCGGCaGG-CGGuCC- -5'
26538 3' -62.2 NC_005357.1 + 6466 0.68 0.244513
Target:  5'- cCGUCGCGCAGgAacuGCaCG-CCGCgCAGGc -3'
miRNA:   3'- -GCAGCGCGUCgUc--CG-GCaGGCG-GUCC- -5'
26538 3' -62.2 NC_005357.1 + 8221 0.67 0.290583
Target:  5'- aGUCGCGCuGGUcGGCgG-CCGUCAGc -3'
miRNA:   3'- gCAGCGCG-UCGuCCGgCaGGCGGUCc -5'
26538 3' -62.2 NC_005357.1 + 8390 0.67 0.276763
Target:  5'- -cUCGCGCuGGCugcguaGCCaGUCgGCCAGGg -3'
miRNA:   3'- gcAGCGCG-UCGuc----CGG-CAGgCGGUCC- -5'
26538 3' -62.2 NC_005357.1 + 8409 0.7 0.184528
Target:  5'- uGUCGgGCAGCGaGCaGUUCGCgGGGg -3'
miRNA:   3'- gCAGCgCGUCGUcCGgCAGGCGgUCC- -5'
26538 3' -62.2 NC_005357.1 + 10478 0.68 0.253216
Target:  5'- aGUCGCGCAGCaccggcccgaacGGGCCGugcucUugaucgaacugcugaCCGCCGGc -3'
miRNA:   3'- gCAGCGCGUCG------------UCCGGC-----A---------------GGCGGUCc -5'
26538 3' -62.2 NC_005357.1 + 10721 0.69 0.204676
Target:  5'- cCG-CGCGCGGCGGGCUG---GUCAGGc -3'
miRNA:   3'- -GCaGCGCGUCGUCCGGCaggCGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.