miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26538 3' -62.2 NC_005357.1 + 345 1.09 0.000181
Target:  5'- gCGUCGCGCAGCAGGCCGUCCGCCAGGc -3'
miRNA:   3'- -GCAGCGCGUCGUCCGGCAGGCGGUCC- -5'
26538 3' -62.2 NC_005357.1 + 21257 0.78 0.043091
Target:  5'- gGcCGCGCAGCAGGCCGcgCUGuugaaCCAGGg -3'
miRNA:   3'- gCaGCGCGUCGUCCGGCa-GGC-----GGUCC- -5'
26538 3' -62.2 NC_005357.1 + 4381 0.76 0.062135
Target:  5'- --aUGCGCAGCcaGGcGCCGUCgCGCCGGGc -3'
miRNA:   3'- gcaGCGCGUCG--UC-CGGCAG-GCGGUCC- -5'
26538 3' -62.2 NC_005357.1 + 24552 0.74 0.09169
Target:  5'- gGUCGCGCAGCgcggcgauggcgAGGCCGgccaCgGUCGGGc -3'
miRNA:   3'- gCAGCGCGUCG------------UCCGGCa---GgCGGUCC- -5'
26538 3' -62.2 NC_005357.1 + 11183 0.74 0.093991
Target:  5'- aCGUCGCccggcucGUAGCuGGGCCG-CgCGCCGGGg -3'
miRNA:   3'- -GCAGCG-------CGUCG-UCCGGCaG-GCGGUCC- -5'
26538 3' -62.2 NC_005357.1 + 27179 0.72 0.117293
Target:  5'- -uUUGUGCGGCAGGCCGacccUCUGCCGu- -3'
miRNA:   3'- gcAGCGCGUCGUCCGGC----AGGCGGUcc -5'
26538 3' -62.2 NC_005357.1 + 24669 0.72 0.120518
Target:  5'- uGUCGCGCccgccGCGGGCCacGUCCacgcCCAGGc -3'
miRNA:   3'- gCAGCGCGu----CGUCCGG--CAGGc---GGUCC- -5'
26538 3' -62.2 NC_005357.1 + 25301 0.72 0.132111
Target:  5'- gGUCGUGCGGCcGGCCcugccaccggcgcucGUC-GCCGGGa -3'
miRNA:   3'- gCAGCGCGUCGuCCGG---------------CAGgCGGUCC- -5'
26538 3' -62.2 NC_005357.1 + 32516 0.71 0.145501
Target:  5'- --cCGCGCccguGCAGGCUGgugaugCCGgCCAGGa -3'
miRNA:   3'- gcaGCGCGu---CGUCCGGCa-----GGC-GGUCC- -5'
26538 3' -62.2 NC_005357.1 + 5896 0.7 0.166152
Target:  5'- gGUCGC-CAGCGuGGUgagUGUgCCGCCGGGa -3'
miRNA:   3'- gCAGCGcGUCGU-CCG---GCA-GGCGGUCC- -5'
26538 3' -62.2 NC_005357.1 + 8409 0.7 0.184528
Target:  5'- uGUCGgGCAGCGaGCaGUUCGCgGGGg -3'
miRNA:   3'- gCAGCgCGUCGUcCGgCAGGCGgUCC- -5'
26538 3' -62.2 NC_005357.1 + 2787 0.69 0.187923
Target:  5'- aCGUUGCGCAGguGcGCCcacuucgucgauucGUCgGgCCAGGu -3'
miRNA:   3'- -GCAGCGCGUCguC-CGG--------------CAGgC-GGUCC- -5'
26538 3' -62.2 NC_005357.1 + 40666 0.69 0.189395
Target:  5'- cCGaCGCGCcaggcGCAGGCCGgccaugaCCGCCcGGu -3'
miRNA:   3'- -GCaGCGCGu----CGUCCGGCa------GGCGGuCC- -5'
26538 3' -62.2 NC_005357.1 + 11439 0.69 0.191372
Target:  5'- gGUCGCGCgugAGCAGaucguccaccgucacGCCGaaguagUCCGCCAGc -3'
miRNA:   3'- gCAGCGCG---UCGUC---------------CGGC------AGGCGGUCc -5'
26538 3' -62.2 NC_005357.1 + 23738 0.69 0.194374
Target:  5'- uCGguggCGCGCAGCAGcgccauGCCGgcgCCaCCGGGc -3'
miRNA:   3'- -GCa---GCGCGUCGUC------CGGCa--GGcGGUCC- -5'
26538 3' -62.2 NC_005357.1 + 31835 0.69 0.199467
Target:  5'- --aUGCGguGCAGGCUG-CgCGCCuGGg -3'
miRNA:   3'- gcaGCGCguCGUCCGGCaG-GCGGuCC- -5'
26538 3' -62.2 NC_005357.1 + 10721 0.69 0.204676
Target:  5'- cCG-CGCGCGGCGGGCUG---GUCAGGc -3'
miRNA:   3'- -GCaGCGCGUCGUCCGGCaggCGGUCC- -5'
26538 3' -62.2 NC_005357.1 + 12008 0.69 0.210002
Target:  5'- aCGUCGgccaGCAGCGcGGCCGUggCCgGCgAGGu -3'
miRNA:   3'- -GCAGCg---CGUCGU-CCGGCA--GG-CGgUCC- -5'
26538 3' -62.2 NC_005357.1 + 1107 0.68 0.226702
Target:  5'- uGUCGCGCGGCAuGUCGcgcaUCgGCCcGGu -3'
miRNA:   3'- gCAGCGCGUCGUcCGGC----AGgCGGuCC- -5'
26538 3' -62.2 NC_005357.1 + 4414 0.68 0.230757
Target:  5'- aG-CGUGCGGCagucguAGGUCGUacccggccgcaacaCCGCCAGGc -3'
miRNA:   3'- gCaGCGCGUCG------UCCGGCA--------------GGCGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.