Results 21 - 40 of 52 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26538 | 3' | -62.2 | NC_005357.1 | + | 27015 | 0.68 | 0.232514 |
Target: 5'- gGUUGCGCGuGCAucGGUCGUCCGgCAu- -3' miRNA: 3'- gCAGCGCGU-CGU--CCGGCAGGCgGUcc -5' |
|||||||
26538 | 3' | -62.2 | NC_005357.1 | + | 13869 | 0.68 | 0.232514 |
Target: 5'- aCGUgCGCGCcGCGauGGCCGgcggCCGCaAGGu -3' miRNA: 3'- -GCA-GCGCGuCGU--CCGGCa---GGCGgUCC- -5' |
|||||||
26538 | 3' | -62.2 | NC_005357.1 | + | 34688 | 0.68 | 0.23845 |
Target: 5'- uCGUCGCcaaCAGCAaGCCGgCCGCCGa- -3' miRNA: 3'- -GCAGCGc--GUCGUcCGGCaGGCGGUcc -5' |
|||||||
26538 | 3' | -62.2 | NC_005357.1 | + | 5240 | 0.68 | 0.23845 |
Target: 5'- -uUCGCGCAGUucGGCCGgCagGUCGGGg -3' miRNA: 3'- gcAGCGCGUCGu-CCGGCaGg-CGGUCC- -5' |
|||||||
26538 | 3' | -62.2 | NC_005357.1 | + | 12291 | 0.68 | 0.23845 |
Target: 5'- cCGaCGCGguGCAGGCCGgCgGCguGu -3' miRNA: 3'- -GCaGCGCguCGUCCGGCaGgCGguCc -5' |
|||||||
26538 | 3' | -62.2 | NC_005357.1 | + | 6466 | 0.68 | 0.244513 |
Target: 5'- cCGUCGCGCAGgAacuGCaCG-CCGCgCAGGc -3' miRNA: 3'- -GCAGCGCGUCgUc--CG-GCaGGCG-GUCC- -5' |
|||||||
26538 | 3' | -62.2 | NC_005357.1 | + | 30290 | 0.68 | 0.244513 |
Target: 5'- gCGgaaGCGCAGCGcguGGCgCGUCgCGCCAa- -3' miRNA: 3'- -GCag-CGCGUCGU---CCG-GCAG-GCGGUcc -5' |
|||||||
26538 | 3' | -62.2 | NC_005357.1 | + | 2232 | 0.68 | 0.244513 |
Target: 5'- --aCGCGCAGCAGGCgG--CGCguGGc -3' miRNA: 3'- gcaGCGCGUCGUCCGgCagGCGguCC- -5' |
|||||||
26538 | 3' | -62.2 | NC_005357.1 | + | 10478 | 0.68 | 0.253216 |
Target: 5'- aGUCGCGCAGCaccggcccgaacGGGCCGugcucUugaucgaacugcugaCCGCCGGc -3' miRNA: 3'- gCAGCGCGUCG------------UCCGGC-----A---------------GGCGGUCc -5' |
|||||||
26538 | 3' | -62.2 | NC_005357.1 | + | 33673 | 0.67 | 0.266088 |
Target: 5'- cCG-CGCGCaaauuccauguugacGGUAGcGCCGcgcCCGCCGGGc -3' miRNA: 3'- -GCaGCGCG---------------UCGUC-CGGCa--GGCGGUCC- -5' |
|||||||
26538 | 3' | -62.2 | NC_005357.1 | + | 15386 | 0.67 | 0.270051 |
Target: 5'- gCGUC-CGCGuGCGGGCCGgcgaagaUGCCGGa -3' miRNA: 3'- -GCAGcGCGU-CGUCCGGCag-----GCGGUCc -5' |
|||||||
26538 | 3' | -62.2 | NC_005357.1 | + | 5334 | 0.67 | 0.276763 |
Target: 5'- aCGUgGCGCAGCAuGGCauCGcgCUGCguGGc -3' miRNA: 3'- -GCAgCGCGUCGU-CCG--GCa-GGCGguCC- -5' |
|||||||
26538 | 3' | -62.2 | NC_005357.1 | + | 19424 | 0.67 | 0.276763 |
Target: 5'- aGgCGCaGCAGCAGGCCGa---CCAGGc -3' miRNA: 3'- gCaGCG-CGUCGUCCGGCaggcGGUCC- -5' |
|||||||
26538 | 3' | -62.2 | NC_005357.1 | + | 8390 | 0.67 | 0.276763 |
Target: 5'- -cUCGCGCuGGCugcguaGCCaGUCgGCCAGGg -3' miRNA: 3'- gcAGCGCG-UCGuc----CGG-CAGgCGGUCC- -5' |
|||||||
26538 | 3' | -62.2 | NC_005357.1 | + | 6377 | 0.67 | 0.282916 |
Target: 5'- aCGUCG-GCAaucaggcGCAGGCCGgCCgGCCcGGu -3' miRNA: 3'- -GCAGCgCGU-------CGUCCGGCaGG-CGGuCC- -5' |
|||||||
26538 | 3' | -62.2 | NC_005357.1 | + | 4528 | 0.67 | 0.283606 |
Target: 5'- aCGUgGCGUgcugGGC-GGUCGUgCCGCCGcGGa -3' miRNA: 3'- -GCAgCGCG----UCGuCCGGCA-GGCGGU-CC- -5' |
|||||||
26538 | 3' | -62.2 | NC_005357.1 | + | 8221 | 0.67 | 0.290583 |
Target: 5'- aGUCGCGCuGGUcGGCgG-CCGUCAGc -3' miRNA: 3'- gCAGCGCG-UCGuCCGgCaGGCGGUCc -5' |
|||||||
26538 | 3' | -62.2 | NC_005357.1 | + | 5751 | 0.67 | 0.297694 |
Target: 5'- ---aGCGCGcCGGGCagcgaGUgCGCCAGGg -3' miRNA: 3'- gcagCGCGUcGUCCGg----CAgGCGGUCC- -5' |
|||||||
26538 | 3' | -62.2 | NC_005357.1 | + | 18412 | 0.66 | 0.304939 |
Target: 5'- aCGUCgGCGaAGguGGCguUGUCCGCCGa- -3' miRNA: 3'- -GCAG-CGCgUCguCCG--GCAGGCGGUcc -5' |
|||||||
26538 | 3' | -62.2 | NC_005357.1 | + | 15584 | 0.66 | 0.312319 |
Target: 5'- aCGaCGCGCuGCGGaugcaccgcGCCaUCgGCCAGGa -3' miRNA: 3'- -GCaGCGCGuCGUC---------CGGcAGgCGGUCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home