Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26538 | 3' | -62.2 | NC_005357.1 | + | 19424 | 0.67 | 0.276763 |
Target: 5'- aGgCGCaGCAGCAGGCCGa---CCAGGc -3' miRNA: 3'- gCaGCG-CGUCGUCCGGCaggcGGUCC- -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 15386 | 0.67 | 0.270051 |
Target: 5'- gCGUC-CGCGuGCGGGCCGgcgaagaUGCCGGa -3' miRNA: 3'- -GCAGcGCGU-CGUCCGGCag-----GCGGUCc -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 33673 | 0.67 | 0.266088 |
Target: 5'- cCG-CGCGCaaauuccauguugacGGUAGcGCCGcgcCCGCCGGGc -3' miRNA: 3'- -GCaGCGCG---------------UCGUC-CGGCa--GGCGGUCC- -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 10478 | 0.68 | 0.253216 |
Target: 5'- aGUCGCGCAGCaccggcccgaacGGGCCGugcucUugaucgaacugcugaCCGCCGGc -3' miRNA: 3'- gCAGCGCGUCG------------UCCGGC-----A---------------GGCGGUCc -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 2232 | 0.68 | 0.244513 |
Target: 5'- --aCGCGCAGCAGGCgG--CGCguGGc -3' miRNA: 3'- gcaGCGCGUCGUCCGgCagGCGguCC- -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 30290 | 0.68 | 0.244513 |
Target: 5'- gCGgaaGCGCAGCGcguGGCgCGUCgCGCCAa- -3' miRNA: 3'- -GCag-CGCGUCGU---CCG-GCAG-GCGGUcc -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 6466 | 0.68 | 0.244513 |
Target: 5'- cCGUCGCGCAGgAacuGCaCG-CCGCgCAGGc -3' miRNA: 3'- -GCAGCGCGUCgUc--CG-GCaGGCG-GUCC- -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 12291 | 0.68 | 0.23845 |
Target: 5'- cCGaCGCGguGCAGGCCGgCgGCguGu -3' miRNA: 3'- -GCaGCGCguCGUCCGGCaGgCGguCc -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 5240 | 0.68 | 0.23845 |
Target: 5'- -uUCGCGCAGUucGGCCGgCagGUCGGGg -3' miRNA: 3'- gcAGCGCGUCGu-CCGGCaGg-CGGUCC- -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 34688 | 0.68 | 0.23845 |
Target: 5'- uCGUCGCcaaCAGCAaGCCGgCCGCCGa- -3' miRNA: 3'- -GCAGCGc--GUCGUcCGGCaGGCGGUcc -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 13869 | 0.68 | 0.232514 |
Target: 5'- aCGUgCGCGCcGCGauGGCCGgcggCCGCaAGGu -3' miRNA: 3'- -GCA-GCGCGuCGU--CCGGCa---GGCGgUCC- -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 27015 | 0.68 | 0.232514 |
Target: 5'- gGUUGCGCGuGCAucGGUCGUCCGgCAu- -3' miRNA: 3'- gCAGCGCGU-CGU--CCGGCAGGCgGUcc -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 4414 | 0.68 | 0.230757 |
Target: 5'- aG-CGUGCGGCagucguAGGUCGUacccggccgcaacaCCGCCAGGc -3' miRNA: 3'- gCaGCGCGUCG------UCCGGCA--------------GGCGGUCC- -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 1107 | 0.68 | 0.226702 |
Target: 5'- uGUCGCGCGGCAuGUCGcgcaUCgGCCcGGu -3' miRNA: 3'- gCAGCGCGUCGUcCGGC----AGgCGGuCC- -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 12008 | 0.69 | 0.210002 |
Target: 5'- aCGUCGgccaGCAGCGcGGCCGUggCCgGCgAGGu -3' miRNA: 3'- -GCAGCg---CGUCGU-CCGGCA--GG-CGgUCC- -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 10721 | 0.69 | 0.204676 |
Target: 5'- cCG-CGCGCGGCGGGCUG---GUCAGGc -3' miRNA: 3'- -GCaGCGCGUCGUCCGGCaggCGGUCC- -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 31835 | 0.69 | 0.199467 |
Target: 5'- --aUGCGguGCAGGCUG-CgCGCCuGGg -3' miRNA: 3'- gcaGCGCguCGUCCGGCaG-GCGGuCC- -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 23738 | 0.69 | 0.194374 |
Target: 5'- uCGguggCGCGCAGCAGcgccauGCCGgcgCCaCCGGGc -3' miRNA: 3'- -GCa---GCGCGUCGUC------CGGCa--GGcGGUCC- -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 11439 | 0.69 | 0.191372 |
Target: 5'- gGUCGCGCgugAGCAGaucguccaccgucacGCCGaaguagUCCGCCAGc -3' miRNA: 3'- gCAGCGCG---UCGUC---------------CGGC------AGGCGGUCc -5' |
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26538 | 3' | -62.2 | NC_005357.1 | + | 40666 | 0.69 | 0.189395 |
Target: 5'- cCGaCGCGCcaggcGCAGGCCGgccaugaCCGCCcGGu -3' miRNA: 3'- -GCaGCGCGu----CGUCCGGCa------GGCGGuCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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