miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26538 3' -62.2 NC_005357.1 + 42040 0.66 0.312319
Target:  5'- aGUCGCGC-GCuGGCCGcgcucaaUCGgCAGGc -3'
miRNA:   3'- gCAGCGCGuCGuCCGGCa------GGCgGUCC- -5'
26538 3' -62.2 NC_005357.1 + 41740 0.66 0.335265
Target:  5'- -cUUGgGCGGCccGGCCGgcgCCGCCguAGGc -3'
miRNA:   3'- gcAGCgCGUCGu-CCGGCa--GGCGG--UCC- -5'
26538 3' -62.2 NC_005357.1 + 40666 0.69 0.189395
Target:  5'- cCGaCGCGCcaggcGCAGGCCGgccaugaCCGCCcGGu -3'
miRNA:   3'- -GCaGCGCGu----CGUCCGGCa------GGCGGuCC- -5'
26538 3' -62.2 NC_005357.1 + 34688 0.68 0.23845
Target:  5'- uCGUCGCcaaCAGCAaGCCGgCCGCCGa- -3'
miRNA:   3'- -GCAGCGc--GUCGUcCGGCaGGCGGUcc -5'
26538 3' -62.2 NC_005357.1 + 33673 0.67 0.266088
Target:  5'- cCG-CGCGCaaauuccauguugacGGUAGcGCCGcgcCCGCCGGGc -3'
miRNA:   3'- -GCaGCGCG---------------UCGUC-CGGCa--GGCGGUCC- -5'
26538 3' -62.2 NC_005357.1 + 32516 0.71 0.145501
Target:  5'- --cCGCGCccguGCAGGCUGgugaugCCGgCCAGGa -3'
miRNA:   3'- gcaGCGCGu---CGUCCGGCa-----GGC-GGUCC- -5'
26538 3' -62.2 NC_005357.1 + 32355 0.66 0.327482
Target:  5'- gGUCGCuGCGGUcgccgccgAGGCCccggCCGCCcagcAGGa -3'
miRNA:   3'- gCAGCG-CGUCG--------UCCGGca--GGCGG----UCC- -5'
26538 3' -62.2 NC_005357.1 + 31835 0.69 0.199467
Target:  5'- --aUGCGguGCAGGCUG-CgCGCCuGGg -3'
miRNA:   3'- gcaGCGCguCGUCCGGCaG-GCGGuCC- -5'
26538 3' -62.2 NC_005357.1 + 30290 0.68 0.244513
Target:  5'- gCGgaaGCGCAGCGcguGGCgCGUCgCGCCAa- -3'
miRNA:   3'- -GCag-CGCGUCGU---CCG-GCAG-GCGGUcc -5'
26538 3' -62.2 NC_005357.1 + 29921 0.66 0.335265
Target:  5'- -uUCGCGCAuCAGuGCCGUggcUUGCCAGu -3'
miRNA:   3'- gcAGCGCGUcGUC-CGGCA---GGCGGUCc -5'
26538 3' -62.2 NC_005357.1 + 29864 0.66 0.340794
Target:  5'- uCGcCGCGCAGCgcgAGGCCGgCaagaaauucaccgaCGCCgAGGu -3'
miRNA:   3'- -GCaGCGCGUCG---UCCGGCaG--------------GCGG-UCC- -5'
26538 3' -62.2 NC_005357.1 + 27703 0.66 0.327482
Target:  5'- cCG-CGCGcCGGCAgcGGCuCG-CCGCCGGu -3'
miRNA:   3'- -GCaGCGC-GUCGU--CCG-GCaGGCGGUCc -5'
26538 3' -62.2 NC_005357.1 + 27179 0.72 0.117293
Target:  5'- -uUUGUGCGGCAGGCCGacccUCUGCCGu- -3'
miRNA:   3'- gcAGCGCGUCGUCCGGC----AGGCGGUcc -5'
26538 3' -62.2 NC_005357.1 + 27015 0.68 0.232514
Target:  5'- gGUUGCGCGuGCAucGGUCGUCCGgCAu- -3'
miRNA:   3'- gCAGCGCGU-CGU--CCGGCAGGCgGUcc -5'
26538 3' -62.2 NC_005357.1 + 26135 0.66 0.319833
Target:  5'- uCGUCgcggcagauuugGCGCAGCGGcucGCCGUCUGCg--- -3'
miRNA:   3'- -GCAG------------CGCGUCGUC---CGGCAGGCGgucc -5'
26538 3' -62.2 NC_005357.1 + 25301 0.72 0.132111
Target:  5'- gGUCGUGCGGCcGGCCcugccaccggcgcucGUC-GCCGGGa -3'
miRNA:   3'- gCAGCGCGUCGuCCGG---------------CAGgCGGUCC- -5'
26538 3' -62.2 NC_005357.1 + 24669 0.72 0.120518
Target:  5'- uGUCGCGCccgccGCGGGCCacGUCCacgcCCAGGc -3'
miRNA:   3'- gCAGCGCGu----CGUCCGG--CAGGc---GGUCC- -5'
26538 3' -62.2 NC_005357.1 + 24552 0.74 0.09169
Target:  5'- gGUCGCGCAGCgcggcgauggcgAGGCCGgccaCgGUCGGGc -3'
miRNA:   3'- gCAGCGCGUCG------------UCCGGCa---GgCGGUCC- -5'
26538 3' -62.2 NC_005357.1 + 23738 0.69 0.194374
Target:  5'- uCGguggCGCGCAGCAGcgccauGCCGgcgCCaCCGGGc -3'
miRNA:   3'- -GCa---GCGCGUCGUC------CGGCa--GGcGGUCC- -5'
26538 3' -62.2 NC_005357.1 + 21989 0.66 0.343183
Target:  5'- -uUCGCGCAGCgugcGGGUuuCGUCggCGCCuGGc -3'
miRNA:   3'- gcAGCGCGUCG----UCCG--GCAG--GCGGuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.