miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26538 3' -62.2 NC_005357.1 + 21257 0.78 0.043091
Target:  5'- gGcCGCGCAGCAGGCCGcgCUGuugaaCCAGGg -3'
miRNA:   3'- gCaGCGCGUCGUCCGGCa-GGC-----GGUCC- -5'
26538 3' -62.2 NC_005357.1 + 19424 0.67 0.276763
Target:  5'- aGgCGCaGCAGCAGGCCGa---CCAGGc -3'
miRNA:   3'- gCaGCG-CGUCGUCCGGCaggcGGUCC- -5'
26538 3' -62.2 NC_005357.1 + 18412 0.66 0.304939
Target:  5'- aCGUCgGCGaAGguGGCguUGUCCGCCGa- -3'
miRNA:   3'- -GCAG-CGCgUCguCCG--GCAGGCGGUcc -5'
26538 3' -62.2 NC_005357.1 + 17426 0.66 0.343183
Target:  5'- aCGUCGCccuugaGCAGU-GGCC--CCGCCAGc -3'
miRNA:   3'- -GCAGCG------CGUCGuCCGGcaGGCGGUCc -5'
26538 3' -62.2 NC_005357.1 + 15584 0.66 0.312319
Target:  5'- aCGaCGCGCuGCGGaugcaccgcGCCaUCgGCCAGGa -3'
miRNA:   3'- -GCaGCGCGuCGUC---------CGGcAGgCGGUCC- -5'
26538 3' -62.2 NC_005357.1 + 15386 0.67 0.270051
Target:  5'- gCGUC-CGCGuGCGGGCCGgcgaagaUGCCGGa -3'
miRNA:   3'- -GCAGcGCGU-CGUCCGGCag-----GCGGUCc -5'
26538 3' -62.2 NC_005357.1 + 14971 0.66 0.312319
Target:  5'- gCGgCGCGCuGGCauaccagcgccaGGGCCugcggCCGCCGGGc -3'
miRNA:   3'- -GCaGCGCG-UCG------------UCCGGca---GGCGGUCC- -5'
26538 3' -62.2 NC_005357.1 + 13869 0.68 0.232514
Target:  5'- aCGUgCGCGCcGCGauGGCCGgcggCCGCaAGGu -3'
miRNA:   3'- -GCA-GCGCGuCGU--CCGGCa---GGCGgUCC- -5'
26538 3' -62.2 NC_005357.1 + 12291 0.68 0.23845
Target:  5'- cCGaCGCGguGCAGGCCGgCgGCguGu -3'
miRNA:   3'- -GCaGCGCguCGUCCGGCaGgCGguCc -5'
26538 3' -62.2 NC_005357.1 + 12008 0.69 0.210002
Target:  5'- aCGUCGgccaGCAGCGcGGCCGUggCCgGCgAGGu -3'
miRNA:   3'- -GCAGCg---CGUCGU-CCGGCA--GG-CGgUCC- -5'
26538 3' -62.2 NC_005357.1 + 11439 0.69 0.191372
Target:  5'- gGUCGCGCgugAGCAGaucguccaccgucacGCCGaaguagUCCGCCAGc -3'
miRNA:   3'- gCAGCGCG---UCGUC---------------CGGC------AGGCGGUCc -5'
26538 3' -62.2 NC_005357.1 + 11183 0.74 0.093991
Target:  5'- aCGUCGCccggcucGUAGCuGGGCCG-CgCGCCGGGg -3'
miRNA:   3'- -GCAGCG-------CGUCG-UCCGGCaG-GCGGUCC- -5'
26538 3' -62.2 NC_005357.1 + 10721 0.69 0.204676
Target:  5'- cCG-CGCGCGGCGGGCUG---GUCAGGc -3'
miRNA:   3'- -GCaGCGCGUCGUCCGGCaggCGGUCC- -5'
26538 3' -62.2 NC_005357.1 + 10478 0.68 0.253216
Target:  5'- aGUCGCGCAGCaccggcccgaacGGGCCGugcucUugaucgaacugcugaCCGCCGGc -3'
miRNA:   3'- gCAGCGCGUCG------------UCCGGC-----A---------------GGCGGUCc -5'
26538 3' -62.2 NC_005357.1 + 8409 0.7 0.184528
Target:  5'- uGUCGgGCAGCGaGCaGUUCGCgGGGg -3'
miRNA:   3'- gCAGCgCGUCGUcCGgCAGGCGgUCC- -5'
26538 3' -62.2 NC_005357.1 + 8390 0.67 0.276763
Target:  5'- -cUCGCGCuGGCugcguaGCCaGUCgGCCAGGg -3'
miRNA:   3'- gcAGCGCG-UCGuc----CGG-CAGgCGGUCC- -5'
26538 3' -62.2 NC_005357.1 + 8221 0.67 0.290583
Target:  5'- aGUCGCGCuGGUcGGCgG-CCGUCAGc -3'
miRNA:   3'- gCAGCGCG-UCGuCCGgCaGGCGGUCc -5'
26538 3' -62.2 NC_005357.1 + 6466 0.68 0.244513
Target:  5'- cCGUCGCGCAGgAacuGCaCG-CCGCgCAGGc -3'
miRNA:   3'- -GCAGCGCGUCgUc--CG-GCaGGCG-GUCC- -5'
26538 3' -62.2 NC_005357.1 + 6377 0.67 0.282916
Target:  5'- aCGUCG-GCAaucaggcGCAGGCCGgCCgGCCcGGu -3'
miRNA:   3'- -GCAGCgCGU-------CGUCCGGCaGG-CGGuCC- -5'
26538 3' -62.2 NC_005357.1 + 5896 0.7 0.166152
Target:  5'- gGUCGC-CAGCGuGGUgagUGUgCCGCCGGGa -3'
miRNA:   3'- gCAGCGcGUCGU-CCG---GCA-GGCGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.