miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26539 3' -59.2 NC_005357.1 + 973 1.11 0.000141
Target:  5'- cAGCUUGCAGCCACUUGGCCGCCUGGCg -3'
miRNA:   3'- -UCGAACGUCGGUGAACCGGCGGACCG- -5'
26539 3' -59.2 NC_005357.1 + 664 0.81 0.032095
Target:  5'- aGGC-UGUAGCCACcaGGCCGCCUacGGCg -3'
miRNA:   3'- -UCGaACGUCGGUGaaCCGGCGGA--CCG- -5'
26539 3' -59.2 NC_005357.1 + 14929 0.77 0.063318
Target:  5'- aAGCUgGCGGCCGa--GGCCGCC-GGCa -3'
miRNA:   3'- -UCGAaCGUCGGUgaaCCGGCGGaCCG- -5'
26539 3' -59.2 NC_005357.1 + 41111 0.74 0.10362
Target:  5'- cGCUUGuCGGCCuggUGGCCGUCgcccugGGCg -3'
miRNA:   3'- uCGAAC-GUCGGugaACCGGCGGa-----CCG- -5'
26539 3' -59.2 NC_005357.1 + 24570 0.73 0.130068
Target:  5'- uGGCgagGcCGGCCACggucgGGCCGUCcGGCg -3'
miRNA:   3'- -UCGaa-C-GUCGGUGaa---CCGGCGGaCCG- -5'
26539 3' -59.2 NC_005357.1 + 37275 0.73 0.122923
Target:  5'- gGGCgugaGCAGCgAC--GGCCGCCUGcGCg -3'
miRNA:   3'- -UCGaa--CGUCGgUGaaCCGGCGGAC-CG- -5'
26539 3' -59.2 NC_005357.1 + 21747 0.72 0.154288
Target:  5'- gGGC--GCGGCCGCguccacauaggacaGGCCGCCcGGCa -3'
miRNA:   3'- -UCGaaCGUCGGUGaa------------CCGGCGGaCCG- -5'
26539 3' -59.2 NC_005357.1 + 14996 0.72 0.14552
Target:  5'- gGGCcUGCGGCCGCcgGGCgcggugCGCCaGGCg -3'
miRNA:   3'- -UCGaACGUCGGUGaaCCG------GCGGaCCG- -5'
26539 3' -59.2 NC_005357.1 + 27580 0.72 0.15819
Target:  5'- cAGCgUGCGG-CGC-UGGCCGCCaacGGCa -3'
miRNA:   3'- -UCGaACGUCgGUGaACCGGCGGa--CCG- -5'
26539 3' -59.2 NC_005357.1 + 11578 0.72 0.162181
Target:  5'- aAGCcaUGCcgcccagGGCCGCcggcUGGCCGCCgGGCa -3'
miRNA:   3'- -UCGa-ACG-------UCGGUGa---ACCGGCGGaCCG- -5'
26539 3' -59.2 NC_005357.1 + 28008 0.71 0.181529
Target:  5'- ----cGguGCCGCa-GGCgCGCCUGGCg -3'
miRNA:   3'- ucgaaCguCGGUGaaCCG-GCGGACCG- -5'
26539 3' -59.2 NC_005357.1 + 21118 0.71 0.189619
Target:  5'- uGCUUGCugguaucgacgcuGCCcaGCUUGGCCGCCguguccgcgcccUGGUu -3'
miRNA:   3'- uCGAACGu------------CGG--UGAACCGGCGG------------ACCG- -5'
26539 3' -59.2 NC_005357.1 + 11138 0.71 0.171848
Target:  5'- gAGCaguuCGGCCuGCUgcugGGCCGCCUGcGCa -3'
miRNA:   3'- -UCGaac-GUCGG-UGAa---CCGGCGGAC-CG- -5'
26539 3' -59.2 NC_005357.1 + 9385 0.71 0.166262
Target:  5'- uGCauugUGCAGCCACUgcaugucgcgcaGGCCGCg-GGCu -3'
miRNA:   3'- uCGa---ACGUCGGUGAa-----------CCGGCGgaCCG- -5'
26539 3' -59.2 NC_005357.1 + 464 0.7 0.202347
Target:  5'- cAGCUUGCGGgCGCUgucgcGGUCggauGCCUcGGCa -3'
miRNA:   3'- -UCGAACGUCgGUGAa----CCGG----CGGA-CCG- -5'
26539 3' -59.2 NC_005357.1 + 13439 0.7 0.213515
Target:  5'- cGGCagGCccGCCAgCUUGGCgGCCUcgGGCg -3'
miRNA:   3'- -UCGaaCGu-CGGU-GAACCGgCGGA--CCG- -5'
26539 3' -59.2 NC_005357.1 + 39588 0.7 0.219295
Target:  5'- cGCUggUGCuggcGCCGCUgcgcgUGGCCGCgagcacCUGGCc -3'
miRNA:   3'- uCGA--ACGu---CGGUGA-----ACCGGCG------GACCG- -5'
26539 3' -59.2 NC_005357.1 + 19028 0.69 0.23744
Target:  5'- gGGUgcgGUAGCC-CUgguagcGGCCGCCggcGGCg -3'
miRNA:   3'- -UCGaa-CGUCGGuGAa-----CCGGCGGa--CCG- -5'
26539 3' -59.2 NC_005357.1 + 6771 0.69 0.250223
Target:  5'- uAGUUUGCccGCCACccUGGgaaucuaugaCCGCCUGGUc -3'
miRNA:   3'- -UCGAACGu-CGGUGa-ACC----------GGCGGACCG- -5'
26539 3' -59.2 NC_005357.1 + 715 0.69 0.231256
Target:  5'- -uCUUGuCGGCCAC--GGCCaagucgagcGCCUGGCg -3'
miRNA:   3'- ucGAAC-GUCGGUGaaCCGG---------CGGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.