miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26539 3' -59.2 NC_005357.1 + 464 0.7 0.202347
Target:  5'- cAGCUUGCGGgCGCUgucgcGGUCggauGCCUcGGCa -3'
miRNA:   3'- -UCGAACGUCgGUGAa----CCGG----CGGA-CCG- -5'
26539 3' -59.2 NC_005357.1 + 664 0.81 0.032095
Target:  5'- aGGC-UGUAGCCACcaGGCCGCCUacGGCg -3'
miRNA:   3'- -UCGaACGUCGGUGaaCCGGCGGA--CCG- -5'
26539 3' -59.2 NC_005357.1 + 715 0.69 0.231256
Target:  5'- -uCUUGuCGGCCAC--GGCCaagucgagcGCCUGGCg -3'
miRNA:   3'- ucGAAC-GUCGGUGaaCCGG---------CGGACCG- -5'
26539 3' -59.2 NC_005357.1 + 973 1.11 0.000141
Target:  5'- cAGCUUGCAGCCACUUGGCCGCCUGGCg -3'
miRNA:   3'- -UCGAACGUCGGUGAACCGGCGGACCG- -5'
26539 3' -59.2 NC_005357.1 + 1754 0.67 0.330797
Target:  5'- ----gGCGGUCAUggccGGCCugcGCCUGGCg -3'
miRNA:   3'- ucgaaCGUCGGUGaa--CCGG---CGGACCG- -5'
26539 3' -59.2 NC_005357.1 + 1962 0.66 0.361883
Target:  5'- gAGCgcGCGGCCcugggggaaggcacGCUguaGGCCGCgaGGUc -3'
miRNA:   3'- -UCGaaCGUCGG--------------UGAa--CCGGCGgaCCG- -5'
26539 3' -59.2 NC_005357.1 + 2830 0.66 0.407015
Target:  5'- uGCUcGCGGCCACgcgcagcgGcGCCagcaccagcgagggGCCUGGUu -3'
miRNA:   3'- uCGAaCGUCGGUGaa------C-CGG--------------CGGACCG- -5'
26539 3' -59.2 NC_005357.1 + 5342 0.67 0.31483
Target:  5'- cAGCaugGCAucgcGCUGCgUGGCCGCCUGcaccGCg -3'
miRNA:   3'- -UCGaa-CGU----CGGUGaACCGGCGGAC----CG- -5'
26539 3' -59.2 NC_005357.1 + 5688 0.67 0.32274
Target:  5'- uGCUUGcCGGCCuugucCUUGGCCuuGUCggucGGCa -3'
miRNA:   3'- uCGAAC-GUCGGu----GAACCGG--CGGa---CCG- -5'
26539 3' -59.2 NC_005357.1 + 6771 0.69 0.250223
Target:  5'- uAGUUUGCccGCCACccUGGgaaucuaugaCCGCCUGGUc -3'
miRNA:   3'- -UCGAACGu-CGGUGa-ACC----------GGCGGACCG- -5'
26539 3' -59.2 NC_005357.1 + 7710 0.67 0.339001
Target:  5'- cGGCUugccgaugaacUGCAGCgCACgcucGGCgGCC-GGCu -3'
miRNA:   3'- -UCGA-----------ACGUCG-GUGaa--CCGgCGGaCCG- -5'
26539 3' -59.2 NC_005357.1 + 8633 0.68 0.307067
Target:  5'- cGC-UGCGGUgGCgaGGUCGCC-GGCc -3'
miRNA:   3'- uCGaACGUCGgUGaaCCGGCGGaCCG- -5'
26539 3' -59.2 NC_005357.1 + 8667 0.69 0.231256
Target:  5'- cGCUgugUGCAGCgGCUgcUGcGCCGCCcaGGUg -3'
miRNA:   3'- uCGA---ACGUCGgUGA--AC-CGGCGGa-CCG- -5'
26539 3' -59.2 NC_005357.1 + 9210 0.66 0.373278
Target:  5'- cGGCggcGCGGCgCACguucugcGGCgCGCCcGGCg -3'
miRNA:   3'- -UCGaa-CGUCG-GUGaa-----CCG-GCGGaCCG- -5'
26539 3' -59.2 NC_005357.1 + 9385 0.71 0.166262
Target:  5'- uGCauugUGCAGCCACUgcaugucgcgcaGGCCGCg-GGCu -3'
miRNA:   3'- uCGa---ACGUCGGUGAa-----------CCGGCGgaCCG- -5'
26539 3' -59.2 NC_005357.1 + 9490 0.69 0.23744
Target:  5'- ----cGCAGCCG--UGGUCGCcCUGGCc -3'
miRNA:   3'- ucgaaCGUCGGUgaACCGGCG-GACCG- -5'
26539 3' -59.2 NC_005357.1 + 9818 0.67 0.347352
Target:  5'- cGGCgucGCGGCCcuugACgcgGGCCaGCUUGGUc -3'
miRNA:   3'- -UCGaa-CGUCGG----UGaa-CCGG-CGGACCG- -5'
26539 3' -59.2 NC_005357.1 + 9989 0.67 0.355849
Target:  5'- gGGCguagggGCAGUCGCUgccGUCGUCUuGGCa -3'
miRNA:   3'- -UCGaa----CGUCGGUGAac-CGGCGGA-CCG- -5'
26539 3' -59.2 NC_005357.1 + 11138 0.71 0.171848
Target:  5'- gAGCaguuCGGCCuGCUgcugGGCCGCCUGcGCa -3'
miRNA:   3'- -UCGaac-GUCGG-UGAa---CCGGCGGAC-CG- -5'
26539 3' -59.2 NC_005357.1 + 11578 0.72 0.162181
Target:  5'- aAGCcaUGCcgcccagGGCCGCcggcUGGCCGCCgGGCa -3'
miRNA:   3'- -UCGa-ACG-------UCGGUGa---ACCGGCGGaCCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.