Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26539 | 3' | -59.2 | NC_005357.1 | + | 41751 | 0.69 | 0.263569 |
Target: 5'- cGGCcgGC-GCCGCcguaGGCgGCCUGGUg -3' miRNA: 3'- -UCGaaCGuCGGUGaa--CCGgCGGACCG- -5' |
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26539 | 3' | -59.2 | NC_005357.1 | + | 41452 | 0.67 | 0.354993 |
Target: 5'- cGGCcagGCGGCCAagUGGCUgcaagcuGCCgugGGCa -3' miRNA: 3'- -UCGaa-CGUCGGUgaACCGG-------CGGa--CCG- -5' |
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26539 | 3' | -59.2 | NC_005357.1 | + | 41111 | 0.74 | 0.10362 |
Target: 5'- cGCUUGuCGGCCuggUGGCCGUCgcccugGGCg -3' miRNA: 3'- uCGAAC-GUCGGugaACCGGCGGa-----CCG- -5' |
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26539 | 3' | -59.2 | NC_005357.1 | + | 40194 | 0.69 | 0.243762 |
Target: 5'- ----cGCGGCCACgc-GCCGCCUGcuGCg -3' miRNA: 3'- ucgaaCGUCGGUGaacCGGCGGAC--CG- -5' |
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26539 | 3' | -59.2 | NC_005357.1 | + | 39588 | 0.7 | 0.219295 |
Target: 5'- cGCUggUGCuggcGCCGCUgcgcgUGGCCGCgagcacCUGGCc -3' miRNA: 3'- uCGA--ACGu---CGGUGA-----ACCGGCG------GACCG- -5' |
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26539 | 3' | -59.2 | NC_005357.1 | + | 39571 | 0.66 | 0.382207 |
Target: 5'- uGGCUcUGCcaacGCUacgGCUUGGCgGgCUGGCc -3' miRNA: 3'- -UCGA-ACGu---CGG---UGAACCGgCgGACCG- -5' |
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26539 | 3' | -59.2 | NC_005357.1 | + | 37275 | 0.73 | 0.122923 |
Target: 5'- gGGCgugaGCAGCgAC--GGCCGCCUGcGCg -3' miRNA: 3'- -UCGaa--CGUCGgUGaaCCGGCGGAC-CG- -5' |
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26539 | 3' | -59.2 | NC_005357.1 | + | 36041 | 0.66 | 0.391277 |
Target: 5'- cGaggGC-GCCGCggcGGCCGaCCUGGUg -3' miRNA: 3'- uCgaaCGuCGGUGaa-CCGGC-GGACCG- -5' |
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26539 | 3' | -59.2 | NC_005357.1 | + | 34189 | 0.66 | 0.364491 |
Target: 5'- cGCUUGaagcgcaAGCUGCUgacGGCCGCCgaccaGCg -3' miRNA: 3'- uCGAACg------UCGGUGAa--CCGGCGGac---CG- -5' |
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26539 | 3' | -59.2 | NC_005357.1 | + | 34021 | 0.66 | 0.364491 |
Target: 5'- aAGCgcaCGGCC-C-UGGCCGaCUGGCu -3' miRNA: 3'- -UCGaacGUCGGuGaACCGGCgGACCG- -5' |
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26539 | 3' | -59.2 | NC_005357.1 | + | 33761 | 0.67 | 0.331611 |
Target: 5'- cGGCgcaGCAGCCGCUgcacacagcgaguacGGCgCGgCCUGGg -3' miRNA: 3'- -UCGaa-CGUCGGUGAa--------------CCG-GC-GGACCg -5' |
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26539 | 3' | -59.2 | NC_005357.1 | + | 32642 | 0.67 | 0.339001 |
Target: 5'- cGGCgUGC-GCgACcUGGCCGCgUGGa -3' miRNA: 3'- -UCGaACGuCGgUGaACCGGCGgACCg -5' |
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26539 | 3' | -59.2 | NC_005357.1 | + | 30834 | 0.68 | 0.307067 |
Target: 5'- uGCUgcccgGCGGCCAgccGGCgGCCcugGGCg -3' miRNA: 3'- uCGAa----CGUCGGUgaaCCGgCGGa--CCG- -5' |
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26539 | 3' | -59.2 | NC_005357.1 | + | 28008 | 0.71 | 0.181529 |
Target: 5'- ----cGguGCCGCa-GGCgCGCCUGGCg -3' miRNA: 3'- ucgaaCguCGGUGaaCCG-GCGGACCG- -5' |
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26539 | 3' | -59.2 | NC_005357.1 | + | 27580 | 0.72 | 0.15819 |
Target: 5'- cAGCgUGCGG-CGC-UGGCCGCCaacGGCa -3' miRNA: 3'- -UCGaACGUCgGUGaACCGGCGGa--CCG- -5' |
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26539 | 3' | -59.2 | NC_005357.1 | + | 27435 | 0.66 | 0.364491 |
Target: 5'- cGCgcccgGCGGCCGCa-GGCCcugGCgCUGGUa -3' miRNA: 3'- uCGaa---CGUCGGUGaaCCGG---CG-GACCG- -5' |
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26539 | 3' | -59.2 | NC_005357.1 | + | 26371 | 0.68 | 0.277486 |
Target: 5'- cGCgcgGCGGCCACgugcgcgaacUGGCCuacaaCUGGCa -3' miRNA: 3'- uCGaa-CGUCGGUGa---------ACCGGcg---GACCG- -5' |
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26539 | 3' | -59.2 | NC_005357.1 | + | 25744 | 0.68 | 0.270455 |
Target: 5'- cGGCg-GCAGCaCGCUgGGCgCGCUgcugGGCg -3' miRNA: 3'- -UCGaaCGUCG-GUGAaCCG-GCGGa---CCG- -5' |
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26539 | 3' | -59.2 | NC_005357.1 | + | 25589 | 0.68 | 0.299452 |
Target: 5'- cGCUcgUGCAuccgaacuaugcGCCGCgugaacUGcGCCGCCUGGg -3' miRNA: 3'- uCGA--ACGU------------CGGUGa-----AC-CGGCGGACCg -5' |
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26539 | 3' | -59.2 | NC_005357.1 | + | 24570 | 0.73 | 0.130068 |
Target: 5'- uGGCgagGcCGGCCACggucgGGCCGUCcGGCg -3' miRNA: 3'- -UCGaa-C-GUCGGUGaa---CCGGCGGaCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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