miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26539 3' -59.2 NC_005357.1 + 21747 0.72 0.154288
Target:  5'- gGGC--GCGGCCGCguccacauaggacaGGCCGCCcGGCa -3'
miRNA:   3'- -UCGaaCGUCGGUGaa------------CCGGCGGaCCG- -5'
26539 3' -59.2 NC_005357.1 + 21118 0.71 0.189619
Target:  5'- uGCUUGCugguaucgacgcuGCCcaGCUUGGCCGCCguguccgcgcccUGGUu -3'
miRNA:   3'- uCGAACGu------------CGG--UGAACCGGCGG------------ACCG- -5'
26539 3' -59.2 NC_005357.1 + 19028 0.69 0.23744
Target:  5'- gGGUgcgGUAGCC-CUgguagcGGCCGCCggcGGCg -3'
miRNA:   3'- -UCGaa-CGUCGGuGAa-----CCGGCGGa--CCG- -5'
26539 3' -59.2 NC_005357.1 + 18774 0.67 0.355849
Target:  5'- cGCcuggUGCAGUUGCUgcccGCCGCC-GGCu -3'
miRNA:   3'- uCGa---ACGUCGGUGAac--CGGCGGaCCG- -5'
26539 3' -59.2 NC_005357.1 + 18065 0.66 0.391277
Target:  5'- cGGCgcggGguGCgUGCUgGGCCGCCgaagccGGCg -3'
miRNA:   3'- -UCGaa--CguCG-GUGAaCCGGCGGa-----CCG- -5'
26539 3' -59.2 NC_005357.1 + 16367 0.67 0.339001
Target:  5'- uGUUcUGCGGCUugUUGGUagUGCC-GGCa -3'
miRNA:   3'- uCGA-ACGUCGGugAACCG--GCGGaCCG- -5'
26539 3' -59.2 NC_005357.1 + 14996 0.72 0.14552
Target:  5'- gGGCcUGCGGCCGCcgGGCgcggugCGCCaGGCg -3'
miRNA:   3'- -UCGaACGUCGGUGaaCCG------GCGGaCCG- -5'
26539 3' -59.2 NC_005357.1 + 14929 0.77 0.063318
Target:  5'- aAGCUgGCGGCCGa--GGCCGCC-GGCa -3'
miRNA:   3'- -UCGAaCGUCGGUgaaCCGGCGGaCCG- -5'
26539 3' -59.2 NC_005357.1 + 14161 0.66 0.409833
Target:  5'- cAGCgcGCGGUCAUggugcgcaacaUGGUgaGCCUGGCg -3'
miRNA:   3'- -UCGaaCGUCGGUGa----------ACCGg-CGGACCG- -5'
26539 3' -59.2 NC_005357.1 + 13439 0.7 0.213515
Target:  5'- cGGCagGCccGCCAgCUUGGCgGCCUcgGGCg -3'
miRNA:   3'- -UCGaaCGu-CGGU-GAACCGgCGGA--CCG- -5'
26539 3' -59.2 NC_005357.1 + 13168 0.68 0.307067
Target:  5'- cGGCcagUGuCGGCCGCgcUGGgCGCCcuUGGCc -3'
miRNA:   3'- -UCGa--AC-GUCGGUGa-ACCgGCGG--ACCG- -5'
26539 3' -59.2 NC_005357.1 + 12870 0.66 0.373278
Target:  5'- cAGCUUGUuguagAGCCACaggcucgUGGUgucguCGCCUuuGGCg -3'
miRNA:   3'- -UCGAACG-----UCGGUGa------ACCG-----GCGGA--CCG- -5'
26539 3' -59.2 NC_005357.1 + 12236 0.68 0.270455
Target:  5'- aAGCccgGCGGCUACUucaUGGCCuucaccgaCUGGCg -3'
miRNA:   3'- -UCGaa-CGUCGGUGA---ACCGGcg------GACCG- -5'
26539 3' -59.2 NC_005357.1 + 11696 0.68 0.284662
Target:  5'- ---cUGCGGCgGaCUUaGCCGCUUGGCg -3'
miRNA:   3'- ucgaACGUCGgU-GAAcCGGCGGACCG- -5'
26539 3' -59.2 NC_005357.1 + 11578 0.72 0.162181
Target:  5'- aAGCcaUGCcgcccagGGCCGCcggcUGGCCGCCgGGCa -3'
miRNA:   3'- -UCGa-ACG-------UCGGUGa---ACCGGCGGaCCG- -5'
26539 3' -59.2 NC_005357.1 + 11138 0.71 0.171848
Target:  5'- gAGCaguuCGGCCuGCUgcugGGCCGCCUGcGCa -3'
miRNA:   3'- -UCGaac-GUCGG-UGAa---CCGGCGGAC-CG- -5'
26539 3' -59.2 NC_005357.1 + 9989 0.67 0.355849
Target:  5'- gGGCguagggGCAGUCGCUgccGUCGUCUuGGCa -3'
miRNA:   3'- -UCGaa----CGUCGGUGAac-CGGCGGA-CCG- -5'
26539 3' -59.2 NC_005357.1 + 9818 0.67 0.347352
Target:  5'- cGGCgucGCGGCCcuugACgcgGGCCaGCUUGGUc -3'
miRNA:   3'- -UCGaa-CGUCGG----UGaa-CCGG-CGGACCG- -5'
26539 3' -59.2 NC_005357.1 + 9490 0.69 0.23744
Target:  5'- ----cGCAGCCG--UGGUCGCcCUGGCc -3'
miRNA:   3'- ucgaaCGUCGGUgaACCGGCG-GACCG- -5'
26539 3' -59.2 NC_005357.1 + 9385 0.71 0.166262
Target:  5'- uGCauugUGCAGCCACUgcaugucgcgcaGGCCGCg-GGCu -3'
miRNA:   3'- uCGa---ACGUCGGUGAa-----------CCGGCGgaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.