miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26539 3' -59.2 NC_005357.1 + 14929 0.77 0.063318
Target:  5'- aAGCUgGCGGCCGa--GGCCGCC-GGCa -3'
miRNA:   3'- -UCGAaCGUCGGUgaaCCGGCGGaCCG- -5'
26539 3' -59.2 NC_005357.1 + 7710 0.67 0.339001
Target:  5'- cGGCUugccgaugaacUGCAGCgCACgcucGGCgGCC-GGCu -3'
miRNA:   3'- -UCGA-----------ACGUCG-GUGaa--CCGgCGGaCCG- -5'
26539 3' -59.2 NC_005357.1 + 9818 0.67 0.347352
Target:  5'- cGGCgucGCGGCCcuugACgcgGGCCaGCUUGGUc -3'
miRNA:   3'- -UCGaa-CGUCGG----UGaa-CCGG-CGGACCG- -5'
26539 3' -59.2 NC_005357.1 + 14161 0.66 0.409833
Target:  5'- cAGCgcGCGGUCAUggugcgcaacaUGGUgaGCCUGGCg -3'
miRNA:   3'- -UCGaaCGUCGGUGa----------ACCGg-CGGACCG- -5'
26539 3' -59.2 NC_005357.1 + 28008 0.71 0.181529
Target:  5'- ----cGguGCCGCa-GGCgCGCCUGGCg -3'
miRNA:   3'- ucgaaCguCGGUGaaCCG-GCGGACCG- -5'
26539 3' -59.2 NC_005357.1 + 715 0.69 0.231256
Target:  5'- -uCUUGuCGGCCAC--GGCCaagucgagcGCCUGGCg -3'
miRNA:   3'- ucGAAC-GUCGGUGaaCCGG---------CGGACCG- -5'
26539 3' -59.2 NC_005357.1 + 9490 0.69 0.23744
Target:  5'- ----cGCAGCCG--UGGUCGCcCUGGCc -3'
miRNA:   3'- ucgaaCGUCGGUgaACCGGCG-GACCG- -5'
26539 3' -59.2 NC_005357.1 + 40194 0.69 0.243762
Target:  5'- ----cGCGGCCACgc-GCCGCCUGcuGCg -3'
miRNA:   3'- ucgaaCGUCGGUGaacCGGCGGAC--CG- -5'
26539 3' -59.2 NC_005357.1 + 26371 0.68 0.277486
Target:  5'- cGCgcgGCGGCCACgugcgcgaacUGGCCuacaaCUGGCa -3'
miRNA:   3'- uCGaa-CGUCGGUGa---------ACCGGcg---GACCG- -5'
26539 3' -59.2 NC_005357.1 + 1754 0.67 0.330797
Target:  5'- ----gGCGGUCAUggccGGCCugcGCCUGGCg -3'
miRNA:   3'- ucgaaCGUCGGUGaa--CCGG---CGGACCG- -5'
26539 3' -59.2 NC_005357.1 + 30834 0.68 0.307067
Target:  5'- uGCUgcccgGCGGCCAgccGGCgGCCcugGGCg -3'
miRNA:   3'- uCGAa----CGUCGGUgaaCCGgCGGa--CCG- -5'
26539 3' -59.2 NC_005357.1 + 12236 0.68 0.270455
Target:  5'- aAGCccgGCGGCUACUucaUGGCCuucaccgaCUGGCg -3'
miRNA:   3'- -UCGaa-CGUCGGUGA---ACCGGcg------GACCG- -5'
26539 3' -59.2 NC_005357.1 + 41111 0.74 0.10362
Target:  5'- cGCUUGuCGGCCuggUGGCCGUCgcccugGGCg -3'
miRNA:   3'- uCGAAC-GUCGGugaACCGGCGGa-----CCG- -5'
26539 3' -59.2 NC_005357.1 + 5342 0.67 0.31483
Target:  5'- cAGCaugGCAucgcGCUGCgUGGCCGCCUGcaccGCg -3'
miRNA:   3'- -UCGaa-CGU----CGGUGaACCGGCGGAC----CG- -5'
26539 3' -59.2 NC_005357.1 + 14996 0.72 0.14552
Target:  5'- gGGCcUGCGGCCGCcgGGCgcggugCGCCaGGCg -3'
miRNA:   3'- -UCGaACGUCGGUGaaCCG------GCGGaCCG- -5'
26539 3' -59.2 NC_005357.1 + 41751 0.69 0.263569
Target:  5'- cGGCcgGC-GCCGCcguaGGCgGCCUGGUg -3'
miRNA:   3'- -UCGaaCGuCGGUGaa--CCGgCGGACCG- -5'
26539 3' -59.2 NC_005357.1 + 5688 0.67 0.32274
Target:  5'- uGCUUGcCGGCCuugucCUUGGCCuuGUCggucGGCa -3'
miRNA:   3'- uCGAAC-GUCGGu----GAACCGG--CGGa---CCG- -5'
26539 3' -59.2 NC_005357.1 + 32642 0.67 0.339001
Target:  5'- cGGCgUGC-GCgACcUGGCCGCgUGGa -3'
miRNA:   3'- -UCGaACGuCGgUGaACCGGCGgACCg -5'
26539 3' -59.2 NC_005357.1 + 27580 0.72 0.15819
Target:  5'- cAGCgUGCGG-CGC-UGGCCGCCaacGGCa -3'
miRNA:   3'- -UCGaACGUCgGUGaACCGGCGGa--CCG- -5'
26539 3' -59.2 NC_005357.1 + 8667 0.69 0.231256
Target:  5'- cGCUgugUGCAGCgGCUgcUGcGCCGCCcaGGUg -3'
miRNA:   3'- uCGA---ACGUCGgUGA--AC-CGGCGGa-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.