Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26539 | 5' | -54.5 | NC_005357.1 | + | 14902 | 0.66 | 0.698414 |
Target: 5'- gUCugCGCGGCGaUCu-GCugCUGGccGg -3' miRNA: 3'- -AGugGCGUCGC-AGcuUGugGACCuuC- -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 18902 | 0.66 | 0.698414 |
Target: 5'- -gACCGCGuGCGc----CGCCUGGAAGg -3' miRNA: 3'- agUGGCGU-CGCagcuuGUGGACCUUC- -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 21989 | 0.66 | 0.698414 |
Target: 5'- uUCG-CGCAGCGUgCGGguuucgucgGCGCCUGGc-- -3' miRNA: 3'- -AGUgGCGUCGCA-GCU---------UGUGGACCuuc -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 17883 | 0.66 | 0.693981 |
Target: 5'- aUCGCCGCGcuGCG-CGAccacgcggucaucCACCUGGAc- -3' miRNA: 3'- -AGUGGCGU--CGCaGCUu------------GUGGACCUuc -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 41289 | 0.66 | 0.687314 |
Target: 5'- cCGCCGUAGCG-CGAgcuaacgguuACACCgGGccGa -3' miRNA: 3'- aGUGGCGUCGCaGCU----------UGUGGaCCuuC- -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 5390 | 0.66 | 0.687314 |
Target: 5'- gUCACUGguGCGcgccgCGAGCACCUu---- -3' miRNA: 3'- -AGUGGCguCGCa----GCUUGUGGAccuuc -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 7996 | 0.66 | 0.687314 |
Target: 5'- gCACCaCGGCGUCGGACGugccCUUGGc-- -3' miRNA: 3'- aGUGGcGUCGCAGCUUGU----GGACCuuc -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 9813 | 0.66 | 0.676159 |
Target: 5'- -gACCGCGGCGUCGcGGC-CCUuGAc- -3' miRNA: 3'- agUGGCGUCGCAGC-UUGuGGAcCUuc -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 34146 | 0.66 | 0.676159 |
Target: 5'- cCGCgGCcuggucgauAGCGugcgucagaUCGAACACCUGGGc- -3' miRNA: 3'- aGUGgCG---------UCGC---------AGCUUGUGGACCUuc -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 37203 | 0.66 | 0.675041 |
Target: 5'- aCACCGUGGCGUCcAACAUCcucgacgUGGGc- -3' miRNA: 3'- aGUGGCGUCGCAGcUUGUGG-------ACCUuc -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 3763 | 0.66 | 0.668323 |
Target: 5'- cCGCCGCuggacguAGCcUCGGucgugccgaaagccaGCGCCUGGAAu -3' miRNA: 3'- aGUGGCG-------UCGcAGCU---------------UGUGGACCUUc -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 2839 | 0.66 | 0.66496 |
Target: 5'- cCACgCGCAGCGgCGccAGCACCaGcGAGGg -3' miRNA: 3'- aGUG-GCGUCGCaGC--UUGUGGaC-CUUC- -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 28475 | 0.66 | 0.66496 |
Target: 5'- gUCGCCGUAGUgGUCGAGCAuCCgcucGGc-- -3' miRNA: 3'- -AGUGGCGUCG-CAGCUUGU-GGa---CCuuc -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 29962 | 0.66 | 0.66496 |
Target: 5'- gUCGUCGCGGCGcaCGAcgGCCUGGAu- -3' miRNA: 3'- -AGUGGCGUCGCa-GCUugUGGACCUuc -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 25630 | 0.66 | 0.66496 |
Target: 5'- gUCGCCaGCAGCG-CGucCACCUcGGcGAGu -3' miRNA: 3'- -AGUGG-CGUCGCaGCuuGUGGA-CC-UUC- -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 5023 | 0.66 | 0.66496 |
Target: 5'- aUUACCGacuacuGCGUUGAuauuCGCCUGGuuGg -3' miRNA: 3'- -AGUGGCgu----CGCAGCUu---GUGGACCuuC- -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 25086 | 0.66 | 0.653729 |
Target: 5'- cCAgCGCAGCG-CGcccGGCGCCgUGGGAu -3' miRNA: 3'- aGUgGCGUCGCaGC---UUGUGG-ACCUUc -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 6627 | 0.67 | 0.642477 |
Target: 5'- cCGCCGcCAGCuUCGcGCGCUUGGccGg -3' miRNA: 3'- aGUGGC-GUCGcAGCuUGUGGACCuuC- -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 27402 | 0.67 | 0.642477 |
Target: 5'- gUCGCUcuuGUAGuCGUCGcGCGCCUGGc-- -3' miRNA: 3'- -AGUGG---CGUC-GCAGCuUGUGGACCuuc -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 12977 | 0.67 | 0.631215 |
Target: 5'- gUCGCCuGguGCcagGAGCACCUGGGc- -3' miRNA: 3'- -AGUGG-CguCGcagCUUGUGGACCUuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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