Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26540 | 3' | -56.7 | NC_005357.1 | + | 9444 | 0.7 | 0.357112 |
Target: 5'- -cGUugGU-CGCGUCCACGCCgAGGGc -3' miRNA: 3'- gcCGugCAgGUGUAGGUGCGGgUUCU- -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 27842 | 0.7 | 0.365738 |
Target: 5'- uGGCGCcggCCGCG-CCGCuGCUCAAGAa -3' miRNA: 3'- gCCGUGca-GGUGUaGGUG-CGGGUUCU- -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 25202 | 0.69 | 0.410981 |
Target: 5'- gGGUgAUGUCCaACGUCCGCGUCCu--- -3' miRNA: 3'- gCCG-UGCAGG-UGUAGGUGCGGGuucu -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 6879 | 0.69 | 0.374508 |
Target: 5'- uCGGCACGUCCAcCAUCugCugGCaucgcaucaUCAGGAa -3' miRNA: 3'- -GCCGUGCAGGU-GUAG--GugCG---------GGUUCU- -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 13011 | 0.69 | 0.410981 |
Target: 5'- gCGaGCGCGUggGCAa-CGCGCCCAAGAu -3' miRNA: 3'- -GC-CGUGCAggUGUagGUGCGGGUUCU- -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 31844 | 0.69 | 0.383419 |
Target: 5'- aGGCuGCGcgCCugGguaCUACGCCCGAGGc -3' miRNA: 3'- gCCG-UGCa-GGugUa--GGUGCGGGUUCU- -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 4773 | 0.68 | 0.459536 |
Target: 5'- uCGGCGuuCGcCCACA-CUGCGCCCAGc- -3' miRNA: 3'- -GCCGU--GCaGGUGUaGGUGCGGGUUcu -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 13652 | 0.68 | 0.456536 |
Target: 5'- gCGGC-CGUCCAUGUCCuuggugauaugaccGCGCaCCGuGAg -3' miRNA: 3'- -GCCGuGCAGGUGUAGG--------------UGCG-GGUuCU- -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 5531 | 0.68 | 0.420438 |
Target: 5'- cCGGC-CGcCCAgGUUC-CGCCCAGGu -3' miRNA: 3'- -GCCGuGCaGGUgUAGGuGCGGGUUCu -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 17775 | 0.68 | 0.420438 |
Target: 5'- gGGCGCGacaaCAcCAUCCugGCCCGc-- -3' miRNA: 3'- gCCGUGCag--GU-GUAGGugCGGGUucu -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 15381 | 0.68 | 0.459536 |
Target: 5'- uGaGCGCGUCCGCGUgCGgGCCgGcGAa -3' miRNA: 3'- gC-CGUGCAGGUGUAgGUgCGGgUuCU- -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 24096 | 0.68 | 0.46961 |
Target: 5'- gGGCACGggcaccccgCUACAUgCGCGCgUAGGGg -3' miRNA: 3'- gCCGUGCa--------GGUGUAgGUGCGgGUUCU- -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 10531 | 0.68 | 0.46961 |
Target: 5'- cCGGcCACGcuuUCCGCcgCCACGCgCAAcGGg -3' miRNA: 3'- -GCC-GUGC---AGGUGuaGGUGCGgGUU-CU- -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 6328 | 0.68 | 0.420438 |
Target: 5'- gCGGCGCGuUCCGCcccagCCaaaGCGCCCGGc- -3' miRNA: 3'- -GCCGUGC-AGGUGua---GG---UGCGGGUUcu -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 11448 | 0.68 | 0.46961 |
Target: 5'- uGaGCAgauCGUCCACcgUCACGCCgAAGu -3' miRNA: 3'- gC-CGU---GCAGGUGuaGGUGCGGgUUCu -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 20675 | 0.68 | 0.430025 |
Target: 5'- gCGGCcUGUCCuauguggacGCggCCGCGCCCAAc- -3' miRNA: 3'- -GCCGuGCAGG---------UGuaGGUGCGGGUUcu -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 33211 | 0.68 | 0.430025 |
Target: 5'- gGGCGCG-CCGCAgaacgugcgCCGCGCcgCCGAGc -3' miRNA: 3'- gCCGUGCaGGUGUa--------GGUGCG--GGUUCu -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 28201 | 0.67 | 0.521556 |
Target: 5'- gCGGCGCcuuGUCCAgGUcggCCACGCCgAcGAc -3' miRNA: 3'- -GCCGUG---CAGGUgUA---GGUGCGGgUuCU- -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 18846 | 0.67 | 0.536509 |
Target: 5'- gCGGCAUGUagaaggccgggcggcCCAUGcCCACGUUCGGGAu -3' miRNA: 3'- -GCCGUGCA---------------GGUGUaGGUGCGGGUUCU- -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 29570 | 0.67 | 0.479796 |
Target: 5'- gGGUaucGCGUCagguCggCCGCGCCCAGGc -3' miRNA: 3'- gCCG---UGCAGgu--GuaGGUGCGGGUUCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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