miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26540 3' -56.7 NC_005357.1 + 1417 1.09 0.000551
Target:  5'- cCGGCACGUCCACAUCCACGCCCAAGAu -3'
miRNA:   3'- -GCCGUGCAGGUGUAGGUGCGGGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 24677 0.81 0.062247
Target:  5'- cCGcCGCGggCCACGUCCACGCCCAGGc -3'
miRNA:   3'- -GCcGUGCa-GGUGUAGGUGCGGGUUCu -5'
26540 3' -56.7 NC_005357.1 + 8496 0.77 0.120578
Target:  5'- uCGGCAUaGUCCACGUCgAUGCCCuuGAu -3'
miRNA:   3'- -GCCGUG-CAGGUGUAGgUGCGGGuuCU- -5'
26540 3' -56.7 NC_005357.1 + 38717 0.74 0.200406
Target:  5'- aCGGCACGggcgCCACGagcgcguggaacaucUUCACGUCCAAGu -3'
miRNA:   3'- -GCCGUGCa---GGUGU---------------AGGUGCGGGUUCu -5'
26540 3' -56.7 NC_005357.1 + 5362 0.74 0.20366
Target:  5'- uGGC-CGcCUGCA-CCGCGCCCAGGGu -3'
miRNA:   3'- gCCGuGCaGGUGUaGGUGCGGGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 21747 0.73 0.209186
Target:  5'- gGGCGCGgCCGCGUCCAcauaggacaggcCGCCCGGc- -3'
miRNA:   3'- gCCGUGCaGGUGUAGGU------------GCGGGUUcu -5'
26540 3' -56.7 NC_005357.1 + 30147 0.73 0.220627
Target:  5'- cCGGCACGcugggCCAgCAaCC-CGCCCAGGAc -3'
miRNA:   3'- -GCCGUGCa----GGU-GUaGGuGCGGGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 357 0.72 0.251573
Target:  5'- aGGC-CGUCCg---CCAgGCCCGAGAa -3'
miRNA:   3'- gCCGuGCAGGuguaGGUgCGGGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 28952 0.72 0.258176
Target:  5'- uCGGCAuCGcCCAgGUcaugcccgacaCCGCGCCCGAGGc -3'
miRNA:   3'- -GCCGU-GCaGGUgUA-----------GGUGCGGGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 1291 0.71 0.278834
Target:  5'- -uGCcCGcCCACAccgCCGCGCCCAGGGc -3'
miRNA:   3'- gcCGuGCaGGUGUa--GGUGCGGGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 29419 0.71 0.293324
Target:  5'- gGGCGCGUugcccacgcgcUCGCAcgUCGCGCCCAGGu -3'
miRNA:   3'- gCCGUGCA-----------GGUGUa-GGUGCGGGUUCu -5'
26540 3' -56.7 NC_005357.1 + 13809 0.71 0.293324
Target:  5'- uGGC-CGgCCuCAUCCGCGCCCGGu- -3'
miRNA:   3'- gCCGuGCaGGuGUAGGUGCGGGUUcu -5'
26540 3' -56.7 NC_005357.1 + 39684 0.71 0.293324
Target:  5'- uCGGCACGcCCgaGCAgcgccgggCCGCGCUCAAGc -3'
miRNA:   3'- -GCCGUGCaGG--UGUa-------GGUGCGGGUUCu -5'
26540 3' -56.7 NC_005357.1 + 32327 0.71 0.31615
Target:  5'- aGGCcgGCGUCCcgACAaCCGcCGCCCAGGu -3'
miRNA:   3'- gCCG--UGCAGG--UGUaGGU-GCGGGUUCu -5'
26540 3' -56.7 NC_005357.1 + 24328 0.7 0.340291
Target:  5'- aCGGCgcgaagGCGUCCugGUUCGCGCCg---- -3'
miRNA:   3'- -GCCG------UGCAGGugUAGGUGCGGguucu -5'
26540 3' -56.7 NC_005357.1 + 33091 0.7 0.348629
Target:  5'- gCGGCG-GcCUACAUCCuCGCCCAuGAa -3'
miRNA:   3'- -GCCGUgCaGGUGUAGGuGCGGGUuCU- -5'
26540 3' -56.7 NC_005357.1 + 29482 0.7 0.348629
Target:  5'- -cGCGCGa--ACAUCC-CGCCCGAGAa -3'
miRNA:   3'- gcCGUGCaggUGUAGGuGCGGGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 28911 0.7 0.348629
Target:  5'- uCGGCGCGgacggcaaaCCGCuuaCCuCGCCCAAGGc -3'
miRNA:   3'- -GCCGUGCa--------GGUGua-GGuGCGGGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 18155 0.7 0.357112
Target:  5'- uGGuCACuGUCCgGCG-CCACGCUCAAGGu -3'
miRNA:   3'- gCC-GUG-CAGG-UGUaGGUGCGGGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 9444 0.7 0.357112
Target:  5'- -cGUugGU-CGCGUCCACGCCgAGGGc -3'
miRNA:   3'- gcCGugCAgGUGUAGGUGCGGgUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.