Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26540 | 3' | -56.7 | NC_005357.1 | + | 7772 | 0.67 | 0.490089 |
Target: 5'- cCGGCGCGaUCUgcgccgGCGUCCAcccuucgcCGCCCAgcAGGc -3' miRNA: 3'- -GCCGUGC-AGG------UGUAGGU--------GCGGGU--UCU- -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 6879 | 0.69 | 0.374508 |
Target: 5'- uCGGCACGUCCAcCAUCugCugGCaucgcaucaUCAGGAa -3' miRNA: 3'- -GCCGUGCAGGU-GUAG--GugCG---------GGUUCU- -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 5531 | 0.68 | 0.420438 |
Target: 5'- cCGGC-CGcCCAgGUUC-CGCCCAGGu -3' miRNA: 3'- -GCCGuGCaGGUgUAGGuGCGGGUUCu -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 13652 | 0.68 | 0.456536 |
Target: 5'- gCGGC-CGUCCAUGUCCuuggugauaugaccGCGCaCCGuGAg -3' miRNA: 3'- -GCCGuGCAGGUGUAGG--------------UGCG-GGUuCU- -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 4773 | 0.68 | 0.459536 |
Target: 5'- uCGGCGuuCGcCCACA-CUGCGCCCAGc- -3' miRNA: 3'- -GCCGU--GCaGGUGUaGGUGCGGGUUcu -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 15381 | 0.68 | 0.459536 |
Target: 5'- uGaGCGCGUCCGCGUgCGgGCCgGcGAa -3' miRNA: 3'- gC-CGUGCAGGUGUAgGUgCGGgUuCU- -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 24096 | 0.68 | 0.46961 |
Target: 5'- gGGCACGggcaccccgCUACAUgCGCGCgUAGGGg -3' miRNA: 3'- gCCGUGCa--------GGUGUAgGUGCGgGUUCU- -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 10531 | 0.68 | 0.46961 |
Target: 5'- cCGGcCACGcuuUCCGCcgCCACGCgCAAcGGg -3' miRNA: 3'- -GCC-GUGC---AGGUGuaGGUGCGgGUU-CU- -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 29570 | 0.67 | 0.479796 |
Target: 5'- gGGUaucGCGUCagguCggCCGCGCCCAGGc -3' miRNA: 3'- gCCG---UGCAGgu--GuaGGUGCGGGUUCu -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 27842 | 0.7 | 0.365738 |
Target: 5'- uGGCGCcggCCGCG-CCGCuGCUCAAGAa -3' miRNA: 3'- gCCGUGca-GGUGUaGGUG-CGGGUUCU- -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 9444 | 0.7 | 0.357112 |
Target: 5'- -cGUugGU-CGCGUCCACGCCgAGGGc -3' miRNA: 3'- gcCGugCAgGUGUAGGUGCGGgUUCU- -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 33091 | 0.7 | 0.348629 |
Target: 5'- gCGGCG-GcCUACAUCCuCGCCCAuGAa -3' miRNA: 3'- -GCCGUgCaGGUGUAGGuGCGGGUuCU- -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 24677 | 0.81 | 0.062247 |
Target: 5'- cCGcCGCGggCCACGUCCACGCCCAGGc -3' miRNA: 3'- -GCcGUGCa-GGUGUAGGUGCGGGUUCu -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 8496 | 0.77 | 0.120578 |
Target: 5'- uCGGCAUaGUCCACGUCgAUGCCCuuGAu -3' miRNA: 3'- -GCCGUG-CAGGUGUAGgUGCGGGuuCU- -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 21747 | 0.73 | 0.209186 |
Target: 5'- gGGCGCGgCCGCGUCCAcauaggacaggcCGCCCGGc- -3' miRNA: 3'- gCCGUGCaGGUGUAGGU------------GCGGGUUcu -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 357 | 0.72 | 0.251573 |
Target: 5'- aGGC-CGUCCg---CCAgGCCCGAGAa -3' miRNA: 3'- gCCGuGCAGGuguaGGUgCGGGUUCU- -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 1291 | 0.71 | 0.278834 |
Target: 5'- -uGCcCGcCCACAccgCCGCGCCCAGGGc -3' miRNA: 3'- gcCGuGCaGGUGUa--GGUGCGGGUUCU- -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 29419 | 0.71 | 0.293324 |
Target: 5'- gGGCGCGUugcccacgcgcUCGCAcgUCGCGCCCAGGu -3' miRNA: 3'- gCCGUGCA-----------GGUGUa-GGUGCGGGUUCu -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 39684 | 0.71 | 0.293324 |
Target: 5'- uCGGCACGcCCgaGCAgcgccgggCCGCGCUCAAGc -3' miRNA: 3'- -GCCGUGCaGG--UGUa-------GGUGCGGGUUCu -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 32327 | 0.71 | 0.31615 |
Target: 5'- aGGCcgGCGUCCcgACAaCCGcCGCCCAGGu -3' miRNA: 3'- gCCG--UGCAGG--UGUaGGU-GCGGGUUCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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