miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26540 3' -56.7 NC_005357.1 + 38717 0.74 0.200406
Target:  5'- aCGGCACGggcgCCACGagcgcguggaacaucUUCACGUCCAAGu -3'
miRNA:   3'- -GCCGUGCa---GGUGU---------------AGGUGCGGGUUCu -5'
26540 3' -56.7 NC_005357.1 + 11448 0.68 0.46961
Target:  5'- uGaGCAgauCGUCCACcgUCACGCCgAAGu -3'
miRNA:   3'- gC-CGU---GCAGGUGuaGGUGCGGgUUCu -5'
26540 3' -56.7 NC_005357.1 + 23164 0.67 0.510974
Target:  5'- aCGGCGauUCCAgCAUCgACG-CCGAGAa -3'
miRNA:   3'- -GCCGUgcAGGU-GUAGgUGCgGGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 32821 0.66 0.586562
Target:  5'- aGGCccugaACGUCgAac-UCACGCCCGAGGu -3'
miRNA:   3'- gCCG-----UGCAGgUguaGGUGCGGGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 13809 0.71 0.293324
Target:  5'- uGGC-CGgCCuCAUCCGCGCCCGGu- -3'
miRNA:   3'- gCCGuGCaGGuGUAGGUGCGGGUUcu -5'
26540 3' -56.7 NC_005357.1 + 24328 0.7 0.340291
Target:  5'- aCGGCgcgaagGCGUCCugGUUCGCGCCg---- -3'
miRNA:   3'- -GCCG------UGCAGGugUAGGUGCGGguucu -5'
26540 3' -56.7 NC_005357.1 + 29482 0.7 0.348629
Target:  5'- -cGCGCGa--ACAUCC-CGCCCGAGAa -3'
miRNA:   3'- gcCGUGCaggUGUAGGuGCGGGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 18155 0.7 0.357112
Target:  5'- uGGuCACuGUCCgGCG-CCACGCUCAAGGu -3'
miRNA:   3'- gCC-GUG-CAGG-UGUaGGUGCGGGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 13011 0.69 0.410981
Target:  5'- gCGaGCGCGUggGCAa-CGCGCCCAAGAu -3'
miRNA:   3'- -GC-CGUGCAggUGUagGUGCGGGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 20675 0.68 0.430025
Target:  5'- gCGGCcUGUCCuauguggacGCggCCGCGCCCAAc- -3'
miRNA:   3'- -GCCGuGCAGG---------UGuaGGUGCGGGUUcu -5'
26540 3' -56.7 NC_005357.1 + 17775 0.68 0.420438
Target:  5'- gGGCGCGacaaCAcCAUCCugGCCCGc-- -3'
miRNA:   3'- gCCGUGCag--GU-GUAGGugCGGGUucu -5'
26540 3' -56.7 NC_005357.1 + 31844 0.69 0.383419
Target:  5'- aGGCuGCGcgCCugGguaCUACGCCCGAGGc -3'
miRNA:   3'- gCCG-UGCa-GGugUa--GGUGCGGGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 5362 0.74 0.20366
Target:  5'- uGGC-CGcCUGCA-CCGCGCCCAGGGu -3'
miRNA:   3'- gCCGuGCaGGUGUaGGUGCGGGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 6328 0.68 0.420438
Target:  5'- gCGGCGCGuUCCGCcccagCCaaaGCGCCCGGc- -3'
miRNA:   3'- -GCCGUGC-AGGUGua---GG---UGCGGGUUcu -5'
26540 3' -56.7 NC_005357.1 + 30147 0.73 0.220627
Target:  5'- cCGGCACGcugggCCAgCAaCC-CGCCCAGGAc -3'
miRNA:   3'- -GCCGUGCa----GGU-GUaGGuGCGGGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 13340 0.7 0.357112
Target:  5'- -cGCACGggCCugAccUCgGCGCCCGAGGa -3'
miRNA:   3'- gcCGUGCa-GGugU--AGgUGCGGGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 33211 0.68 0.430025
Target:  5'- gGGCGCG-CCGCAgaacgugcgCCGCGCcgCCGAGc -3'
miRNA:   3'- gCCGUGCaGGUGUa--------GGUGCG--GGUUCu -5'
26540 3' -56.7 NC_005357.1 + 28017 0.67 0.479796
Target:  5'- aGGCGCG-CCugG-CgACGCCCAGc- -3'
miRNA:   3'- gCCGUGCaGGugUaGgUGCGGGUUcu -5'
26540 3' -56.7 NC_005357.1 + 28952 0.72 0.258176
Target:  5'- uCGGCAuCGcCCAgGUcaugcccgacaCCGCGCCCGAGGc -3'
miRNA:   3'- -GCCGU-GCaGGUgUA-----------GGUGCGGGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 28911 0.7 0.348629
Target:  5'- uCGGCGCGgacggcaaaCCGCuuaCCuCGCCCAAGGc -3'
miRNA:   3'- -GCCGUGCa--------GGUGua-GGuGCGGGUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.