miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26540 3' -56.7 NC_005357.1 + 28017 0.67 0.479796
Target:  5'- aGGCGCG-CCugG-CgACGCCCAGc- -3'
miRNA:   3'- gCCGUGCaGGugUaGgUGCGGGUUcu -5'
26540 3' -56.7 NC_005357.1 + 11448 0.68 0.46961
Target:  5'- uGaGCAgauCGUCCACcgUCACGCCgAAGu -3'
miRNA:   3'- gC-CGU---GCAGGUGuaGGUGCGGgUUCu -5'
26540 3' -56.7 NC_005357.1 + 10531 0.68 0.46961
Target:  5'- cCGGcCACGcuuUCCGCcgCCACGCgCAAcGGg -3'
miRNA:   3'- -GCC-GUGC---AGGUGuaGGUGCGgGUU-CU- -5'
26540 3' -56.7 NC_005357.1 + 24096 0.68 0.46961
Target:  5'- gGGCACGggcaccccgCUACAUgCGCGCgUAGGGg -3'
miRNA:   3'- gCCGUGCa--------GGUGUAgGUGCGgGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 15381 0.68 0.459536
Target:  5'- uGaGCGCGUCCGCGUgCGgGCCgGcGAa -3'
miRNA:   3'- gC-CGUGCAGGUGUAgGUgCGGgUuCU- -5'
26540 3' -56.7 NC_005357.1 + 4773 0.68 0.459536
Target:  5'- uCGGCGuuCGcCCACA-CUGCGCCCAGc- -3'
miRNA:   3'- -GCCGU--GCaGGUGUaGGUGCGGGUUcu -5'
26540 3' -56.7 NC_005357.1 + 13652 0.68 0.456536
Target:  5'- gCGGC-CGUCCAUGUCCuuggugauaugaccGCGCaCCGuGAg -3'
miRNA:   3'- -GCCGuGCAGGUGUAGG--------------UGCG-GGUuCU- -5'
26540 3' -56.7 NC_005357.1 + 33211 0.68 0.430025
Target:  5'- gGGCGCG-CCGCAgaacgugcgCCGCGCcgCCGAGc -3'
miRNA:   3'- gCCGUGCaGGUGUa--------GGUGCG--GGUUCu -5'
26540 3' -56.7 NC_005357.1 + 20675 0.68 0.430025
Target:  5'- gCGGCcUGUCCuauguggacGCggCCGCGCCCAAc- -3'
miRNA:   3'- -GCCGuGCAGG---------UGuaGGUGCGGGUUcu -5'
26540 3' -56.7 NC_005357.1 + 6328 0.68 0.420438
Target:  5'- gCGGCGCGuUCCGCcccagCCaaaGCGCCCGGc- -3'
miRNA:   3'- -GCCGUGC-AGGUGua---GG---UGCGGGUUcu -5'
26540 3' -56.7 NC_005357.1 + 17775 0.68 0.420438
Target:  5'- gGGCGCGacaaCAcCAUCCugGCCCGc-- -3'
miRNA:   3'- gCCGUGCag--GU-GUAGGugCGGGUucu -5'
26540 3' -56.7 NC_005357.1 + 5531 0.68 0.420438
Target:  5'- cCGGC-CGcCCAgGUUC-CGCCCAGGu -3'
miRNA:   3'- -GCCGuGCaGGUgUAGGuGCGGGUUCu -5'
26540 3' -56.7 NC_005357.1 + 13011 0.69 0.410981
Target:  5'- gCGaGCGCGUggGCAa-CGCGCCCAAGAu -3'
miRNA:   3'- -GC-CGUGCAggUGUagGUGCGGGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 25202 0.69 0.410981
Target:  5'- gGGUgAUGUCCaACGUCCGCGUCCu--- -3'
miRNA:   3'- gCCG-UGCAGG-UGUAGGUGCGGGuucu -5'
26540 3' -56.7 NC_005357.1 + 31844 0.69 0.383419
Target:  5'- aGGCuGCGcgCCugGguaCUACGCCCGAGGc -3'
miRNA:   3'- gCCG-UGCa-GGugUa--GGUGCGGGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 6879 0.69 0.374508
Target:  5'- uCGGCACGUCCAcCAUCugCugGCaucgcaucaUCAGGAa -3'
miRNA:   3'- -GCCGUGCAGGU-GUAG--GugCG---------GGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 27842 0.7 0.365738
Target:  5'- uGGCGCcggCCGCG-CCGCuGCUCAAGAa -3'
miRNA:   3'- gCCGUGca-GGUGUaGGUG-CGGGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 18155 0.7 0.357112
Target:  5'- uGGuCACuGUCCgGCG-CCACGCUCAAGGu -3'
miRNA:   3'- gCC-GUG-CAGG-UGUaGGUGCGGGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 13340 0.7 0.357112
Target:  5'- -cGCACGggCCugAccUCgGCGCCCGAGGa -3'
miRNA:   3'- gcCGUGCa-GGugU--AGgUGCGGGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 9444 0.7 0.357112
Target:  5'- -cGUugGU-CGCGUCCACGCCgAGGGc -3'
miRNA:   3'- gcCGugCAgGUGUAGGUGCGGgUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.