Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26540 | 5' | -60 | NC_005357.1 | + | 1095 | 0.68 | 0.322649 |
Target: 5'- aCUUCaUGuuGGCgGCGGUaGGCGGCa- -3' miRNA: 3'- -GAAGaACugCCG-CGCCAgCCGCCGga -5' |
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26540 | 5' | -60 | NC_005357.1 | + | 1344 | 0.68 | 0.314935 |
Target: 5'- -----aGGaaGcCGUGGUCGGCGGCCUu -3' miRNA: 3'- gaagaaCUgcC-GCGCCAGCCGCCGGA- -5' |
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26540 | 5' | -60 | NC_005357.1 | + | 1453 | 1.07 | 0.00038 |
Target: 5'- cCUUCUUGACGGCGCGGUCGGCGGCCUc -3' miRNA: 3'- -GAAGAACUGCCGCGCCAGCCGCCGGA- -5' |
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26540 | 5' | -60 | NC_005357.1 | + | 5413 | 0.71 | 0.20366 |
Target: 5'- cCUUCUgcguacgcuccACGGCGCGGaUGGCGGCg- -3' miRNA: 3'- -GAAGAac---------UGCCGCGCCaGCCGCCGga -5' |
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26540 | 5' | -60 | NC_005357.1 | + | 8204 | 0.68 | 0.307362 |
Target: 5'- -aUCgcgcACGGCcucguagucgcGCuGGUCGGCGGCCg -3' miRNA: 3'- gaAGaac-UGCCG-----------CG-CCAGCCGCCGGa -5' |
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26540 | 5' | -60 | NC_005357.1 | + | 9226 | 0.7 | 0.239235 |
Target: 5'- gUUCU--GCGGCGCGccCGGCGGCa- -3' miRNA: 3'- gAAGAacUGCCGCGCcaGCCGCCGga -5' |
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26540 | 5' | -60 | NC_005357.1 | + | 9330 | 0.68 | 0.292634 |
Target: 5'- -----cGuCGGCGCGGcgggCGGCGGCa- -3' miRNA: 3'- gaagaaCuGCCGCGCCa---GCCGCCGga -5' |
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26540 | 5' | -60 | NC_005357.1 | + | 9688 | 0.69 | 0.264845 |
Target: 5'- uCUUCUUgGugGGgGCGGUCauGGCGucaGCCc -3' miRNA: 3'- -GAAGAA-CugCCgCGCCAG--CCGC---CGGa -5' |
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26540 | 5' | -60 | NC_005357.1 | + | 10053 | 0.67 | 0.371861 |
Target: 5'- gCUUCcugcugGGCGGC-CGGggccUCGGCGGCg- -3' miRNA: 3'- -GAAGaa----CUGCCGcGCC----AGCCGCCGga -5' |
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26540 | 5' | -60 | NC_005357.1 | + | 10690 | 0.69 | 0.251772 |
Target: 5'- -gUCUUGACGGCaGCGcgcaCGGCcucGGCCg -3' miRNA: 3'- gaAGAACUGCCG-CGCca--GCCG---CCGGa -5' |
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26540 | 5' | -60 | NC_005357.1 | + | 13521 | 0.69 | 0.251772 |
Target: 5'- --cUUUGugGGacgaGUGGUCGGCgacGGCCa -3' miRNA: 3'- gaaGAACugCCg---CGCCAGCCG---CCGGa -5' |
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26540 | 5' | -60 | NC_005357.1 | + | 13867 | 0.66 | 0.380545 |
Target: 5'- -----cGACGuGCGCgccgcgauGGcCGGCGGCCg -3' miRNA: 3'- gaagaaCUGC-CGCG--------CCaGCCGCCGGa -5' |
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26540 | 5' | -60 | NC_005357.1 | + | 14583 | 0.76 | 0.090215 |
Target: 5'- gUUCUUGagcaGCGGCGCGGcCGGC-GCCa -3' miRNA: 3'- gAAGAAC----UGCCGCGCCaGCCGcCGGa -5' |
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26540 | 5' | -60 | NC_005357.1 | + | 14816 | 0.67 | 0.363313 |
Target: 5'- --cCUcGGCGGCGCugccuucgcccaGGUCgaugccguuGGCGGCCa -3' miRNA: 3'- gaaGAaCUGCCGCG------------CCAG---------CCGCCGGa -5' |
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26540 | 5' | -60 | NC_005357.1 | + | 17089 | 0.67 | 0.371861 |
Target: 5'- -----aGcCGGCGCGGuucUCGGCcgGGCCUu -3' miRNA: 3'- gaagaaCuGCCGCGCC---AGCCG--CCGGA- -5' |
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26540 | 5' | -60 | NC_005357.1 | + | 17663 | 0.69 | 0.271586 |
Target: 5'- -aUCUUGAUGGCGU---CGGCGGgCUg -3' miRNA: 3'- gaAGAACUGCCGCGccaGCCGCCgGA- -5' |
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26540 | 5' | -60 | NC_005357.1 | + | 18033 | 0.67 | 0.330503 |
Target: 5'- gUUCUUGuCGGCG-GGcugcUUGGgGGCCUu -3' miRNA: 3'- gAAGAACuGCCGCgCC----AGCCgCCGGA- -5' |
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26540 | 5' | -60 | NC_005357.1 | + | 18392 | 0.71 | 0.179353 |
Target: 5'- -----cGAUGGCGcCGGU-GGCGGCCa -3' miRNA: 3'- gaagaaCUGCCGC-GCCAgCCGCCGGa -5' |
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26540 | 5' | -60 | NC_005357.1 | + | 18457 | 0.7 | 0.233164 |
Target: 5'- ----gUGACGGuCGCGGcgcCGGCGGCg- -3' miRNA: 3'- gaagaACUGCC-GCGCCa--GCCGCCGga -5' |
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26540 | 5' | -60 | NC_005357.1 | + | 19197 | 0.78 | 0.060643 |
Target: 5'- -----cGA-GGCGCGGUCGGUGGCCg -3' miRNA: 3'- gaagaaCUgCCGCGCCAGCCGCCGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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