miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26540 5' -60 NC_005357.1 + 41738 0.68 0.314935
Target:  5'- -aUCUUgGGCGGCcCGGcCGGCGccGCCg -3'
miRNA:   3'- gaAGAA-CUGCCGcGCCaGCCGC--CGGa -5'
26540 5' -60 NC_005357.1 + 40290 0.69 0.271586
Target:  5'- -----cGGCGGCGCGGUUGacCGGCUg -3'
miRNA:   3'- gaagaaCUGCCGCGCCAGCc-GCCGGa -5'
26540 5' -60 NC_005357.1 + 38874 0.72 0.1655
Target:  5'- -aUUUauGCGGCGCGGUUGGCGGgaCUg -3'
miRNA:   3'- gaAGAacUGCCGCGCCAGCCGCCg-GA- -5'
26540 5' -60 NC_005357.1 + 38268 0.66 0.407396
Target:  5'- -cUCgaccACGGCGCgcaaGGUgGGCGGCUUc -3'
miRNA:   3'- gaAGaac-UGCCGCG----CCAgCCGCCGGA- -5'
26540 5' -60 NC_005357.1 + 37058 0.7 0.215727
Target:  5'- ----gUGACauaacccugGGCGCGGUgcaGGCGGCCa -3'
miRNA:   3'- gaagaACUG---------CCGCGCCAg--CCGCCGGa -5'
26540 5' -60 NC_005357.1 + 36041 0.67 0.354903
Target:  5'- -----cGAgGGCGCcG-CGGCGGCCg -3'
miRNA:   3'- gaagaaCUgCCGCGcCaGCCGCCGGa -5'
26540 5' -60 NC_005357.1 + 34387 0.7 0.221412
Target:  5'- -gUCaugGACGGCGgcaaGGaCGGCGGCCc -3'
miRNA:   3'- gaAGaa-CUGCCGCg---CCaGCCGCCGGa -5'
26540 5' -60 NC_005357.1 + 31900 0.66 0.397413
Target:  5'- ----gUGGCGGCggaaagcGUGGcCGGCGGUCa -3'
miRNA:   3'- gaagaACUGCCG-------CGCCaGCCGCCGGa -5'
26540 5' -60 NC_005357.1 + 31200 0.66 0.407396
Target:  5'- --gCUaGugGGCGUGGgcgggaacgUGGCGGUCa -3'
miRNA:   3'- gaaGAaCugCCGCGCCa--------GCCGCCGGa -5'
26540 5' -60 NC_005357.1 + 29321 0.75 0.103783
Target:  5'- aCUUCaaGGCGGUgGCGGUCGcCGGCCa -3'
miRNA:   3'- -GAAGaaCUGCCG-CGCCAGCcGCCGGa -5'
26540 5' -60 NC_005357.1 + 28936 0.66 0.398314
Target:  5'- -cUCgcccaaGGCGCGGUCGGCaucGCCc -3'
miRNA:   3'- gaAGaacug-CCGCGCCAGCCGc--CGGa -5'
26540 5' -60 NC_005357.1 + 28615 0.67 0.34663
Target:  5'- --cCUUGAaccgGGCGCGGaugaGGCcGGCCa -3'
miRNA:   3'- gaaGAACUg---CCGCGCCag--CCG-CCGGa -5'
26540 5' -60 NC_005357.1 + 27521 0.74 0.126025
Target:  5'- gCUUCU---CGGCGCGGUCGG-GGUCUu -3'
miRNA:   3'- -GAAGAacuGCCGCGCCAGCCgCCGGA- -5'
26540 5' -60 NC_005357.1 + 26358 0.68 0.292634
Target:  5'- -aUCU--ACGGCGCcGcgcgCGGCGGCCa -3'
miRNA:   3'- gaAGAacUGCCGCGcCa---GCCGCCGGa -5'
26540 5' -60 NC_005357.1 + 25581 0.66 0.425943
Target:  5'- ---gUUGuACGcCGCGGUCuGCGGCCc -3'
miRNA:   3'- gaagAAC-UGCcGCGCCAGcCGCCGGa -5'
26540 5' -60 NC_005357.1 + 23529 0.7 0.210168
Target:  5'- cCUUCcaGGCGGCgcacGCGGUCGaUGGCCUc -3'
miRNA:   3'- -GAAGaaCUGCCG----CGCCAGCcGCCGGA- -5'
26540 5' -60 NC_005357.1 + 22440 0.68 0.28548
Target:  5'- ---gUUGGCGaguucuaCGCGGacaUCGGCGGCCUg -3'
miRNA:   3'- gaagAACUGCc------GCGCC---AGCCGCCGGA- -5'
26540 5' -60 NC_005357.1 + 22063 0.66 0.407396
Target:  5'- --gCUUGcuCGGguCGCGGUCGGCGcGCg- -3'
miRNA:   3'- gaaGAACu-GCC--GCGCCAGCCGC-CGga -5'
26540 5' -60 NC_005357.1 + 21276 0.72 0.174625
Target:  5'- -cUgUUGAaccagGGCGCGGacaCGGCGGCCa -3'
miRNA:   3'- gaAgAACUg----CCGCGCCa--GCCGCCGGa -5'
26540 5' -60 NC_005357.1 + 20607 0.73 0.129543
Target:  5'- cCUUCgccaGGCGGCGUcgcaGGUCGGUgucGGCCUg -3'
miRNA:   3'- -GAAGaa--CUGCCGCG----CCAGCCG---CCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.