miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26543 3' -53.9 NC_005357.1 + 20615 0.66 0.711178
Target:  5'- aGGCGGCGUcgcagGUcggUgUCGGCCUGCgCu -3'
miRNA:   3'- gUCGUCGCAa----UAa--AgGGUCGGACGgG- -5'
26543 3' -53.9 NC_005357.1 + 22706 0.66 0.654561
Target:  5'- aAGCAGCaGUUugcgCUCGGUUUGCUCg -3'
miRNA:   3'- gUCGUCG-CAAuaaaGGGUCGGACGGG- -5'
26543 3' -53.9 NC_005357.1 + 26527 0.68 0.570119
Target:  5'- gCAGCAGCGgcaagcugCUgGGCCUcaccuacguGCCCg -3'
miRNA:   3'- -GUCGUCGCaauaaa--GGgUCGGA---------CGGG- -5'
26543 3' -53.9 NC_005357.1 + 26902 0.71 0.414867
Target:  5'- cCGGCAcCGUgcaua-UCGGCCUGCCCa -3'
miRNA:   3'- -GUCGUcGCAauaaagGGUCGGACGGG- -5'
26543 3' -53.9 NC_005357.1 + 27328 0.67 0.631673
Target:  5'- aGGCGcGCGUUGcUUUCCacguaGGCCggGCCg -3'
miRNA:   3'- gUCGU-CGCAAU-AAAGGg----UCGGa-CGGg -5'
26543 3' -53.9 NC_005357.1 + 28404 0.66 0.688696
Target:  5'- cCGGCGGCGcggcg-CCaguagauGCCUGUCCa -3'
miRNA:   3'- -GUCGUCGCaauaaaGGgu-----CGGACGGG- -5'
26543 3' -53.9 NC_005357.1 + 31921 0.69 0.507959
Target:  5'- -uGCGGCGU---UUCgaGGCCUGCUCg -3'
miRNA:   3'- guCGUCGCAauaAAGggUCGGACGGG- -5'
26543 3' -53.9 NC_005357.1 + 32200 0.66 0.654561
Target:  5'- -cGCGGgGgauguUUUCUCGcGCCUGUCCg -3'
miRNA:   3'- guCGUCgCaau--AAAGGGU-CGGACGGG- -5'
26543 3' -53.9 NC_005357.1 + 34151 0.74 0.256694
Target:  5'- cCGGCAGCGUgg---CCCuggaAGCCgaaUGCCCg -3'
miRNA:   3'- -GUCGUCGCAauaaaGGG----UCGG---ACGGG- -5'
26543 3' -53.9 NC_005357.1 + 35364 0.66 0.665978
Target:  5'- -cGCGGCGUcAUgaaguaCCUGGCC-GCCCc -3'
miRNA:   3'- guCGUCGCAaUAaa----GGGUCGGaCGGG- -5'
26543 3' -53.9 NC_005357.1 + 37800 0.68 0.540958
Target:  5'- -cGCAGCGUgg---CCCAGCaucCCCg -3'
miRNA:   3'- guCGUCGCAauaaaGGGUCGgacGGG- -5'
26543 3' -53.9 NC_005357.1 + 39254 0.68 0.55212
Target:  5'- -cGCAGCGgacg--CCgGGCUUGCCa -3'
miRNA:   3'- guCGUCGCaauaaaGGgUCGGACGGg -5'
26543 3' -53.9 NC_005357.1 + 40944 0.73 0.300621
Target:  5'- cCAGCAcuGCGaUAc--CCCGGCCUGCCa -3'
miRNA:   3'- -GUCGU--CGCaAUaaaGGGUCGGACGGg -5'
26543 3' -53.9 NC_005357.1 + 41409 0.67 0.608785
Target:  5'- uCAGCauGGCcgagUAUUUCCCGGCCagugGCgCg -3'
miRNA:   3'- -GUCG--UCGca--AUAAAGGGUCGGa---CGgG- -5'
26543 3' -53.9 NC_005357.1 + 41874 0.66 0.699973
Target:  5'- uGGUcgaGGCGUgGUUUUUCAGCg-GCCCg -3'
miRNA:   3'- gUCG---UCGCAaUAAAGGGUCGgaCGGG- -5'
26543 3' -53.9 NC_005357.1 + 42242 0.66 0.704464
Target:  5'- cCGGCAGCGUgacggugCCCAGCgacaccggggcgcauCcGCCUg -3'
miRNA:   3'- -GUCGUCGCAauaaa--GGGUCG---------------GaCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.