miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26543 3' -53.9 NC_005357.1 + 687 0.7 0.434667
Target:  5'- aCGGCGGCGccgg--CCgGGCC-GCCCa -3'
miRNA:   3'- -GUCGUCGCaauaaaGGgUCGGaCGGG- -5'
26543 3' -53.9 NC_005357.1 + 895 0.66 0.67736
Target:  5'- cCAGCauGGUGggGUUcaUCCCGGCCgcgGCa- -3'
miRNA:   3'- -GUCG--UCGCaaUAA--AGGGUCGGa--CGgg -5'
26543 3' -53.9 NC_005357.1 + 1268 0.66 0.67736
Target:  5'- cCGGCgAGCGccgGUaUUCCCGGCCcucGaCCCa -3'
miRNA:   3'- -GUCG-UCGCaa-UA-AAGGGUCGGa--C-GGG- -5'
26543 3' -53.9 NC_005357.1 + 3009 1.12 0.000551
Target:  5'- gCAGCAGCGUUAUUUCCCAGCCUGCCCu -3'
miRNA:   3'- -GUCGUCGCAAUAAAGGGUCGGACGGG- -5'
26543 3' -53.9 NC_005357.1 + 4127 0.75 0.217565
Target:  5'- -uGCAGCGUUGcUUCCCggcgcauaguggaAGCC-GCCCa -3'
miRNA:   3'- guCGUCGCAAUaAAGGG-------------UCGGaCGGG- -5'
26543 3' -53.9 NC_005357.1 + 4296 0.68 0.581442
Target:  5'- uCGGCGGUGaacugcaCCAGCUUGCCg -3'
miRNA:   3'- -GUCGUCGCaauaaagGGUCGGACGGg -5'
26543 3' -53.9 NC_005357.1 + 6328 0.69 0.48644
Target:  5'- gCGGC-GCGUUccgcCCCAGCCaaagcGCCCg -3'
miRNA:   3'- -GUCGuCGCAAuaaaGGGUCGGa----CGGG- -5'
26543 3' -53.9 NC_005357.1 + 7937 0.73 0.285363
Target:  5'- cCGGC-GCGaggAUUUCCgaCAGCUUGCCCg -3'
miRNA:   3'- -GUCGuCGCaa-UAAAGG--GUCGGACGGG- -5'
26543 3' -53.9 NC_005357.1 + 8130 0.73 0.300621
Target:  5'- uCGGCGGUGac--UUCCCAGCCcuUGCCg -3'
miRNA:   3'- -GUCGUCGCaauaAAGGGUCGG--ACGGg -5'
26543 3' -53.9 NC_005357.1 + 8215 0.67 0.643122
Target:  5'- uGGCGGCcaGUUcgUgCgCGGCCgUGCCCu -3'
miRNA:   3'- gUCGUCG--CAAuaAaGgGUCGG-ACGGG- -5'
26543 3' -53.9 NC_005357.1 + 10166 0.67 0.620223
Target:  5'- uCAGCAGCcagUGUUuugcuugaucgUCCCAcgucaagcgcacGCCgGCCCg -3'
miRNA:   3'- -GUCGUCGca-AUAA-----------AGGGU------------CGGaCGGG- -5'
26543 3' -53.9 NC_005357.1 + 12279 0.69 0.51887
Target:  5'- gGGCGG-GUUGcuggCCCAGCgUGCCg -3'
miRNA:   3'- gUCGUCgCAAUaaa-GGGUCGgACGGg -5'
26543 3' -53.9 NC_005357.1 + 12306 0.69 0.529872
Target:  5'- cCGGCGGCGUg--UUCUggcgCGGCCUcaucGCCUg -3'
miRNA:   3'- -GUCGUCGCAauaAAGG----GUCGGA----CGGG- -5'
26543 3' -53.9 NC_005357.1 + 14674 0.68 0.57238
Target:  5'- uGGguGCGggUGUUgagcgcuugaagCCCGGCCUGCa- -3'
miRNA:   3'- gUCguCGCa-AUAAa-----------GGGUCGGACGgg -5'
26543 3' -53.9 NC_005357.1 + 16681 0.73 0.316502
Target:  5'- cCAGCAGCGcg----CCCAGCgUGCUg -3'
miRNA:   3'- -GUCGUCGCaauaaaGGGUCGgACGGg -5'
26543 3' -53.9 NC_005357.1 + 17091 0.66 0.665978
Target:  5'- cCGGC-GCGg---UUCUCGGCCggGCCUu -3'
miRNA:   3'- -GUCGuCGCaauaAAGGGUCGGa-CGGG- -5'
26543 3' -53.9 NC_005357.1 + 18422 0.71 0.405176
Target:  5'- aGGUGGCGUUGUccgCCgAGuCCUGCaCCg -3'
miRNA:   3'- gUCGUCGCAAUAaa-GGgUC-GGACG-GG- -5'
26543 3' -53.9 NC_005357.1 + 19054 0.66 0.688696
Target:  5'- cCGGCGGCGUcga---UCAGCgUGUCCu -3'
miRNA:   3'- -GUCGUCGCAauaaagGGUCGgACGGG- -5'
26543 3' -53.9 NC_005357.1 + 19854 0.72 0.358929
Target:  5'- uCAGCAGCGUgGUgagUUCgGGCgUGCCg -3'
miRNA:   3'- -GUCGUCGCAaUAa--AGGgUCGgACGGg -5'
26543 3' -53.9 NC_005357.1 + 19935 0.66 0.693214
Target:  5'- uGGCgGGCaugaccagCCCAGCCcGCCCu -3'
miRNA:   3'- gUCG-UCGcaauaaa-GGGUCGGaCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.