Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26543 | 3' | -53.9 | NC_005357.1 | + | 28404 | 0.66 | 0.688696 |
Target: 5'- cCGGCGGCGcggcg-CCaguagauGCCUGUCCa -3' miRNA: 3'- -GUCGUCGCaauaaaGGgu-----CGGACGGG- -5' |
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26543 | 3' | -53.9 | NC_005357.1 | + | 41409 | 0.67 | 0.608785 |
Target: 5'- uCAGCauGGCcgagUAUUUCCCGGCCagugGCgCg -3' miRNA: 3'- -GUCG--UCGca--AUAAAGGGUCGGa---CGgG- -5' |
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26543 | 3' | -53.9 | NC_005357.1 | + | 10166 | 0.67 | 0.620223 |
Target: 5'- uCAGCAGCcagUGUUuugcuugaucgUCCCAcgucaagcgcacGCCgGCCCg -3' miRNA: 3'- -GUCGUCGca-AUAA-----------AGGGU------------CGGaCGGG- -5' |
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26543 | 3' | -53.9 | NC_005357.1 | + | 27328 | 0.67 | 0.631673 |
Target: 5'- aGGCGcGCGUUGcUUUCCacguaGGCCggGCCg -3' miRNA: 3'- gUCGU-CGCAAU-AAAGGg----UCGGa-CGGg -5' |
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26543 | 3' | -53.9 | NC_005357.1 | + | 22706 | 0.66 | 0.654561 |
Target: 5'- aAGCAGCaGUUugcgCUCGGUUUGCUCg -3' miRNA: 3'- gUCGUCG-CAAuaaaGGGUCGGACGGG- -5' |
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26543 | 3' | -53.9 | NC_005357.1 | + | 32200 | 0.66 | 0.654561 |
Target: 5'- -cGCGGgGgauguUUUCUCGcGCCUGUCCg -3' miRNA: 3'- guCGUCgCaau--AAAGGGU-CGGACGGG- -5' |
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26543 | 3' | -53.9 | NC_005357.1 | + | 17091 | 0.66 | 0.665978 |
Target: 5'- cCGGC-GCGg---UUCUCGGCCggGCCUu -3' miRNA: 3'- -GUCGuCGCaauaAAGGGUCGGa-CGGG- -5' |
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26543 | 3' | -53.9 | NC_005357.1 | + | 895 | 0.66 | 0.67736 |
Target: 5'- cCAGCauGGUGggGUUcaUCCCGGCCgcgGCa- -3' miRNA: 3'- -GUCG--UCGCaaUAA--AGGGUCGGa--CGgg -5' |
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26543 | 3' | -53.9 | NC_005357.1 | + | 19054 | 0.66 | 0.688696 |
Target: 5'- cCGGCGGCGUcga---UCAGCgUGUCCu -3' miRNA: 3'- -GUCGUCGCAauaaagGGUCGgACGGG- -5' |
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26543 | 3' | -53.9 | NC_005357.1 | + | 4296 | 0.68 | 0.581442 |
Target: 5'- uCGGCGGUGaacugcaCCAGCUUGCCg -3' miRNA: 3'- -GUCGUCGCaauaaagGGUCGGACGGg -5' |
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26543 | 3' | -53.9 | NC_005357.1 | + | 14674 | 0.68 | 0.57238 |
Target: 5'- uGGguGCGggUGUUgagcgcuugaagCCCGGCCUGCa- -3' miRNA: 3'- gUCguCGCa-AUAAa-----------GGGUCGGACGgg -5' |
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26543 | 3' | -53.9 | NC_005357.1 | + | 37800 | 0.68 | 0.540958 |
Target: 5'- -cGCAGCGUgg---CCCAGCaucCCCg -3' miRNA: 3'- guCGUCGCAauaaaGGGUCGgacGGG- -5' |
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26543 | 3' | -53.9 | NC_005357.1 | + | 4127 | 0.75 | 0.217565 |
Target: 5'- -uGCAGCGUUGcUUCCCggcgcauaguggaAGCC-GCCCa -3' miRNA: 3'- guCGUCGCAAUaAAGGG-------------UCGGaCGGG- -5' |
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26543 | 3' | -53.9 | NC_005357.1 | + | 34151 | 0.74 | 0.256694 |
Target: 5'- cCGGCAGCGUgg---CCCuggaAGCCgaaUGCCCg -3' miRNA: 3'- -GUCGUCGCAauaaaGGG----UCGG---ACGGG- -5' |
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26543 | 3' | -53.9 | NC_005357.1 | + | 7937 | 0.73 | 0.285363 |
Target: 5'- cCGGC-GCGaggAUUUCCgaCAGCUUGCCCg -3' miRNA: 3'- -GUCGuCGCaa-UAAAGG--GUCGGACGGG- -5' |
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26543 | 3' | -53.9 | NC_005357.1 | + | 19854 | 0.72 | 0.358929 |
Target: 5'- uCAGCAGCGUgGUgagUUCgGGCgUGCCg -3' miRNA: 3'- -GUCGUCGCAaUAa--AGGgUCGgACGGg -5' |
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26543 | 3' | -53.9 | NC_005357.1 | + | 18422 | 0.71 | 0.405176 |
Target: 5'- aGGUGGCGUUGUccgCCgAGuCCUGCaCCg -3' miRNA: 3'- gUCGUCGCAAUAaa-GGgUC-GGACG-GG- -5' |
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26543 | 3' | -53.9 | NC_005357.1 | + | 687 | 0.7 | 0.434667 |
Target: 5'- aCGGCGGCGccgg--CCgGGCC-GCCCa -3' miRNA: 3'- -GUCGUCGCaauaaaGGgUCGGaCGGG- -5' |
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26543 | 3' | -53.9 | NC_005357.1 | + | 31921 | 0.69 | 0.507959 |
Target: 5'- -uGCGGCGU---UUCgaGGCCUGCUCg -3' miRNA: 3'- guCGUCGCAauaAAGggUCGGACGGG- -5' |
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26543 | 3' | -53.9 | NC_005357.1 | + | 12279 | 0.69 | 0.51887 |
Target: 5'- gGGCGG-GUUGcuggCCCAGCgUGCCg -3' miRNA: 3'- gUCGUCgCAAUaaa-GGGUCGgACGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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