miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26543 3' -53.9 NC_005357.1 + 12279 0.69 0.51887
Target:  5'- gGGCGG-GUUGcuggCCCAGCgUGCCg -3'
miRNA:   3'- gUCGUCgCAAUaaa-GGGUCGgACGGg -5'
26543 3' -53.9 NC_005357.1 + 37800 0.68 0.540958
Target:  5'- -cGCAGCGUgg---CCCAGCaucCCCg -3'
miRNA:   3'- guCGUCGCAauaaaGGGUCGgacGGG- -5'
26543 3' -53.9 NC_005357.1 + 14674 0.68 0.57238
Target:  5'- uGGguGCGggUGUUgagcgcuugaagCCCGGCCUGCa- -3'
miRNA:   3'- gUCguCGCa-AUAAa-----------GGGUCGGACGgg -5'
26543 3' -53.9 NC_005357.1 + 26527 0.68 0.570119
Target:  5'- gCAGCAGCGgcaagcugCUgGGCCUcaccuacguGCCCg -3'
miRNA:   3'- -GUCGUCGCaauaaa--GGgUCGGA---------CGGG- -5'
26543 3' -53.9 NC_005357.1 + 8215 0.67 0.643122
Target:  5'- uGGCGGCcaGUUcgUgCgCGGCCgUGCCCu -3'
miRNA:   3'- gUCGUCG--CAAuaAaGgGUCGG-ACGGG- -5'
26543 3' -53.9 NC_005357.1 + 35364 0.66 0.665978
Target:  5'- -cGCGGCGUcAUgaaguaCCUGGCC-GCCCc -3'
miRNA:   3'- guCGUCGCAaUAaa----GGGUCGGaCGGG- -5'
26543 3' -53.9 NC_005357.1 + 1268 0.66 0.67736
Target:  5'- cCGGCgAGCGccgGUaUUCCCGGCCcucGaCCCa -3'
miRNA:   3'- -GUCG-UCGCaa-UA-AAGGGUCGGa--C-GGG- -5'
26543 3' -53.9 NC_005357.1 + 19935 0.66 0.693214
Target:  5'- uGGCgGGCaugaccagCCCAGCCcGCCCu -3'
miRNA:   3'- gUCG-UCGcaauaaa-GGGUCGGaCGGG- -5'
26543 3' -53.9 NC_005357.1 + 39254 0.68 0.55212
Target:  5'- -cGCAGCGgacg--CCgGGCUUGCCa -3'
miRNA:   3'- guCGUCGCaauaaaGGgUCGGACGGg -5'
26543 3' -53.9 NC_005357.1 + 12306 0.69 0.529872
Target:  5'- cCGGCGGCGUg--UUCUggcgCGGCCUcaucGCCUg -3'
miRNA:   3'- -GUCGUCGCAauaAAGG----GUCGGA----CGGG- -5'
26543 3' -53.9 NC_005357.1 + 6328 0.69 0.48644
Target:  5'- gCGGC-GCGUUccgcCCCAGCCaaagcGCCCg -3'
miRNA:   3'- -GUCGuCGCAAuaaaGGGUCGGa----CGGG- -5'
26543 3' -53.9 NC_005357.1 + 26902 0.71 0.414867
Target:  5'- cCGGCAcCGUgcaua-UCGGCCUGCCCa -3'
miRNA:   3'- -GUCGUcGCAauaaagGGUCGGACGGG- -5'
26543 3' -53.9 NC_005357.1 + 16681 0.73 0.316502
Target:  5'- cCAGCAGCGcg----CCCAGCgUGCUg -3'
miRNA:   3'- -GUCGUCGCaauaaaGGGUCGgACGGg -5'
26543 3' -53.9 NC_005357.1 + 40944 0.73 0.300621
Target:  5'- cCAGCAcuGCGaUAc--CCCGGCCUGCCa -3'
miRNA:   3'- -GUCGU--CGCaAUaaaGGGUCGGACGGg -5'
26543 3' -53.9 NC_005357.1 + 8130 0.73 0.300621
Target:  5'- uCGGCGGUGac--UUCCCAGCCcuUGCCg -3'
miRNA:   3'- -GUCGUCGCaauaAAGGGUCGG--ACGGg -5'
26543 3' -53.9 NC_005357.1 + 42242 0.66 0.704464
Target:  5'- cCGGCAGCGUgacggugCCCAGCgacaccggggcgcauCcGCCUg -3'
miRNA:   3'- -GUCGUCGCAauaaa--GGGUCG---------------GaCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.