miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26544 3' -60.5 NC_005357.1 + 12665 0.67 0.324162
Target:  5'- --cGUCGCCCAUCaUGCGCagGCgCGUGu -3'
miRNA:   3'- cuuCGGCGGGUGGaACGCG--CG-GCACc -5'
26544 3' -60.5 NC_005357.1 + 34584 0.67 0.316426
Target:  5'- cGAAGcCCGCCuCACCau-CGCGCUGaacaUGGg -3'
miRNA:   3'- -CUUC-GGCGG-GUGGaacGCGCGGC----ACC- -5'
26544 3' -60.5 NC_005357.1 + 18090 0.67 0.316426
Target:  5'- cGAAGCCGgCgcgaaccaggaCGCCUU-CGCGCCGUccGGu -3'
miRNA:   3'- -CUUCGGCgG-----------GUGGAAcGCGCGGCA--CC- -5'
26544 3' -60.5 NC_005357.1 + 34211 0.67 0.30883
Target:  5'- -cGGCCGCCgACCa-GCGCgacuacgagGCCGUGc -3'
miRNA:   3'- cuUCGGCGGgUGGaaCGCG---------CGGCACc -5'
26544 3' -60.5 NC_005357.1 + 14940 0.67 0.301374
Target:  5'- cGAGGCCGCCgGcauCCUcGCGUGgugCGUGGc -3'
miRNA:   3'- -CUUCGGCGGgU---GGAaCGCGCg--GCACC- -5'
26544 3' -60.5 NC_005357.1 + 16675 0.67 0.301374
Target:  5'- --cGCCGCCCAgCa-GCGCGCCcagcGUGc -3'
miRNA:   3'- cuuCGGCGGGUgGaaCGCGCGG----CACc -5'
26544 3' -60.5 NC_005357.1 + 40196 0.68 0.286881
Target:  5'- -cGGCCacGCgCCGCCUgcUGCGCGUgGUGc -3'
miRNA:   3'- cuUCGG--CG-GGUGGA--ACGCGCGgCACc -5'
26544 3' -60.5 NC_005357.1 + 40971 0.68 0.286881
Target:  5'- gGAGGCCGCCgACC----GCGCCGUc- -3'
miRNA:   3'- -CUUCGGCGGgUGGaacgCGCGGCAcc -5'
26544 3' -60.5 NC_005357.1 + 36997 0.68 0.286881
Target:  5'- ---cUCGCCCacGCCgccaucCGCGCCGUGGa -3'
miRNA:   3'- cuucGGCGGG--UGGaac---GCGCGGCACC- -5'
26544 3' -60.5 NC_005357.1 + 19311 0.68 0.279843
Target:  5'- aGGAGCCGUuaccgcugUCGCCguggGCGCcGCCGuUGGc -3'
miRNA:   3'- -CUUCGGCG--------GGUGGaa--CGCG-CGGC-ACC- -5'
26544 3' -60.5 NC_005357.1 + 33877 0.68 0.279843
Target:  5'- --cGCUGCCCGCCaucgGCGCgGCUGUc- -3'
miRNA:   3'- cuuCGGCGGGUGGaa--CGCG-CGGCAcc -5'
26544 3' -60.5 NC_005357.1 + 1762 0.68 0.259552
Target:  5'- -uGGCCgGCCUgcGCCUgGCGCGUCG-GGc -3'
miRNA:   3'- cuUCGG-CGGG--UGGAaCGCGCGGCaCC- -5'
26544 3' -60.5 NC_005357.1 + 20135 0.68 0.259552
Target:  5'- --uGCUGCCCGaCUU-CGaCGCCGUGGu -3'
miRNA:   3'- cuuCGGCGGGUgGAAcGC-GCGGCACC- -5'
26544 3' -60.5 NC_005357.1 + 13854 0.68 0.259552
Target:  5'- --cGCUGCCggugGCCgacgUGCGCGCCGcgaUGGc -3'
miRNA:   3'- cuuCGGCGGg---UGGa---ACGCGCGGC---ACC- -5'
26544 3' -60.5 NC_005357.1 + 38379 0.68 0.259552
Target:  5'- uGGGCCGCUgGCCUgccGCuCGCCGcGGc -3'
miRNA:   3'- cUUCGGCGGgUGGAa--CGcGCGGCaCC- -5'
26544 3' -60.5 NC_005357.1 + 18892 0.69 0.253061
Target:  5'- cGAGGCCaucgaccgcguGCgCCGCCUggaagGCGCGCuCGcGGa -3'
miRNA:   3'- -CUUCGG-----------CG-GGUGGAa----CGCGCG-GCaCC- -5'
26544 3' -60.5 NC_005357.1 + 980 0.69 0.240479
Target:  5'- -cAGCCacuuGgCCGCCUgGCgGUGCCGUGGu -3'
miRNA:   3'- cuUCGG----CgGGUGGAaCG-CGCGGCACC- -5'
26544 3' -60.5 NC_005357.1 + 8688 0.69 0.234386
Target:  5'- --cGCCGCCCAgg-UGUGCGCCGc-- -3'
miRNA:   3'- cuuCGGCGGGUggaACGCGCGGCacc -5'
26544 3' -60.5 NC_005357.1 + 15086 0.69 0.228423
Target:  5'- cAGGCUGCUUugCUgcgaccGCGCGCCGUa- -3'
miRNA:   3'- cUUCGGCGGGugGAa-----CGCGCGGCAcc -5'
26544 3' -60.5 NC_005357.1 + 37982 0.69 0.228423
Target:  5'- aGAAGCCGCaCGCCUggcgguguUGCG-GCCG-GGu -3'
miRNA:   3'- -CUUCGGCGgGUGGA--------ACGCgCGGCaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.