miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26544 3' -60.5 NC_005357.1 + 16383 0.69 0.220864
Target:  5'- uGGAGCgCGCCCGCCgcGCGggcuuugaugccauCGCCGaGGa -3'
miRNA:   3'- -CUUCG-GCGGGUGGaaCGC--------------GCGGCaCC- -5'
26544 3' -60.5 NC_005357.1 + 16593 0.66 0.382203
Target:  5'- cGAGGCCGaCCACgCgaugguguugGCGCcGCCGUuGGu -3'
miRNA:   3'- -CUUCGGCgGGUG-Gaa--------CGCG-CGGCA-CC- -5'
26544 3' -60.5 NC_005357.1 + 16675 0.67 0.301374
Target:  5'- --cGCCGCCCAgCa-GCGCGCCcagcGUGc -3'
miRNA:   3'- cuuCGGCGGGUgGaaCGCGCGG----CACc -5'
26544 3' -60.5 NC_005357.1 + 16943 0.67 0.340053
Target:  5'- cGgcGCCGUCCAgCa-GCGUGCCGcguUGGu -3'
miRNA:   3'- -CuuCGGCGGGUgGaaCGCGCGGC---ACC- -5'
26544 3' -60.5 NC_005357.1 + 18090 0.67 0.316426
Target:  5'- cGAAGCCGgCgcgaaccaggaCGCCUU-CGCGCCGUccGGu -3'
miRNA:   3'- -CUUCGGCgG-----------GUGGAAcGCGCGGCA--CC- -5'
26544 3' -60.5 NC_005357.1 + 18214 0.66 0.39104
Target:  5'- -cGGCCGCUCGCCggacuuugGCaGCGCCuacGUGc -3'
miRNA:   3'- cuUCGGCGGGUGGaa------CG-CGCGG---CACc -5'
26544 3' -60.5 NC_005357.1 + 18424 0.7 0.211301
Target:  5'- -uGGCCgacgcGCCCACCUucgccagucUGUGCGCCGa-- -3'
miRNA:   3'- cuUCGG-----CGGGUGGA---------ACGCGCGGCacc -5'
26544 3' -60.5 NC_005357.1 + 18892 0.69 0.253061
Target:  5'- cGAGGCCaucgaccgcguGCgCCGCCUggaagGCGCGCuCGcGGa -3'
miRNA:   3'- -CUUCGG-----------CG-GGUGGAa----CGCGCG-GCaCC- -5'
26544 3' -60.5 NC_005357.1 + 19311 0.68 0.279843
Target:  5'- aGGAGCCGUuaccgcugUCGCCguggGCGCcGCCGuUGGc -3'
miRNA:   3'- -CUUCGGCG--------GGUGGaa--CGCG-CGGC-ACC- -5'
26544 3' -60.5 NC_005357.1 + 19571 0.66 0.382203
Target:  5'- aGAAGCaGCCCAauUCgcagcGCGCGCUGUcGGc -3'
miRNA:   3'- -CUUCGgCGGGU--GGaa---CGCGCGGCA-CC- -5'
26544 3' -60.5 NC_005357.1 + 19932 0.7 0.195295
Target:  5'- --cGCCGCCgAacuCCUUGuCG-GCCGUGGa -3'
miRNA:   3'- cuuCGGCGGgU---GGAAC-GCgCGGCACC- -5'
26544 3' -60.5 NC_005357.1 + 20135 0.68 0.259552
Target:  5'- --uGCUGCCCGaCUU-CGaCGCCGUGGu -3'
miRNA:   3'- cuuCGGCGGGUgGAAcGC-GCGGCACC- -5'
26544 3' -60.5 NC_005357.1 + 21131 0.7 0.211301
Target:  5'- cGAcGCUGCCCAgCUUgGC-CGCCGUGu -3'
miRNA:   3'- -CUuCGGCGGGUgGAA-CGcGCGGCACc -5'
26544 3' -60.5 NC_005357.1 + 23469 0.66 0.348207
Target:  5'- ----aCGCCgGCgUggaacagGUGCGCCGUGGg -3'
miRNA:   3'- cuucgGCGGgUGgAa------CGCGCGGCACC- -5'
26544 3' -60.5 NC_005357.1 + 24126 0.66 0.382203
Target:  5'- aGggGUCGUaguCCAgCCggcUGCGCGCC-UGGc -3'
miRNA:   3'- -CuuCGGCG---GGU-GGa--ACGCGCGGcACC- -5'
26544 3' -60.5 NC_005357.1 + 25114 0.67 0.343298
Target:  5'- cAAGCCgGCCCauauGCCggaauggaUGCGCGCCcgcggcgccggcuucGUGGa -3'
miRNA:   3'- cUUCGG-CGGG----UGGa-------ACGCGCGG---------------CACC- -5'
26544 3' -60.5 NC_005357.1 + 25744 0.66 0.356501
Target:  5'- -cGGCgGCagcaCGCUggGCGCGCUGcUGGg -3'
miRNA:   3'- cuUCGgCGg---GUGGaaCGCGCGGC-ACC- -5'
26544 3' -60.5 NC_005357.1 + 27830 0.66 0.373499
Target:  5'- --cGCUGCCCGCggUG-GCGCCGg-- -3'
miRNA:   3'- cuuCGGCGGGUGgaACgCGCGGCacc -5'
26544 3' -60.5 NC_005357.1 + 28557 0.72 0.149394
Target:  5'- -cGGCCGCCgGCCaucgcgGCGCGCaCGUcGGc -3'
miRNA:   3'- cuUCGGCGGgUGGaa----CGCGCG-GCA-CC- -5'
26544 3' -60.5 NC_005357.1 + 28986 0.72 0.153502
Target:  5'- cGAGGCCGCCaAgCUgGCGggccUGCCGUGGg -3'
miRNA:   3'- -CUUCGGCGGgUgGAaCGC----GCGGCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.