miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26544 3' -60.5 NC_005357.1 + 601 0.73 0.11671
Target:  5'- -uGGCCGCCUgcgggucgGCCa-GCaGCGCCGUGGa -3'
miRNA:   3'- cuUCGGCGGG--------UGGaaCG-CGCGGCACC- -5'
26544 3' -60.5 NC_005357.1 + 677 0.71 0.170973
Target:  5'- cAGGCCGCCUACg--GCgGCGCCGgccGGg -3'
miRNA:   3'- cUUCGGCGGGUGgaaCG-CGCGGCa--CC- -5'
26544 3' -60.5 NC_005357.1 + 980 0.69 0.240479
Target:  5'- -cAGCCacuuGgCCGCCUgGCgGUGCCGUGGu -3'
miRNA:   3'- cuUCGG----CgGGUGGAaCG-CGCGGCACC- -5'
26544 3' -60.5 NC_005357.1 + 995 0.66 0.39104
Target:  5'- --cGUCGCCCGCUgccCGCGCCacUGGc -3'
miRNA:   3'- cuuCGGCGGGUGGaacGCGCGGc-ACC- -5'
26544 3' -60.5 NC_005357.1 + 1762 0.68 0.259552
Target:  5'- -uGGCCgGCCUgcGCCUgGCGCGUCG-GGc -3'
miRNA:   3'- cuUCGG-CGGG--UGGAaCGCGCGGCaCC- -5'
26544 3' -60.5 NC_005357.1 + 4153 1.09 0.000226
Target:  5'- gGAAGCCGCCCACCUUGCGCGCCGUGGu -3'
miRNA:   3'- -CUUCGGCGGGUGGAACGCGCGGCACC- -5'
26544 3' -60.5 NC_005357.1 + 6628 0.66 0.39104
Target:  5'- --cGCCGCCaGCUUcGCGCGCU-UGGc -3'
miRNA:   3'- cuuCGGCGGgUGGAaCGCGCGGcACC- -5'
26544 3' -60.5 NC_005357.1 + 7259 0.7 0.211301
Target:  5'- cGAuGUCGCCgGCCUUGUGCagcuucucgGCgGUGGu -3'
miRNA:   3'- -CUuCGGCGGgUGGAACGCG---------CGgCACC- -5'
26544 3' -60.5 NC_005357.1 + 8036 0.74 0.098759
Target:  5'- aGGGCCGCCguCCUUGC-CGCCGUc- -3'
miRNA:   3'- cUUCGGCGGguGGAACGcGCGGCAcc -5'
26544 3' -60.5 NC_005357.1 + 8644 0.7 0.195295
Target:  5'- cGAGGUCGCCgGCCUUcauCGCGCgGUcGGc -3'
miRNA:   3'- -CUUCGGCGGgUGGAAc--GCGCGgCA-CC- -5'
26544 3' -60.5 NC_005357.1 + 8688 0.69 0.234386
Target:  5'- --cGCCGCCCAgg-UGUGCGCCGc-- -3'
miRNA:   3'- cuuCGGCGGGUggaACGCGCGGCacc -5'
26544 3' -60.5 NC_005357.1 + 11157 0.72 0.137665
Target:  5'- uGGGCCGCCugcgCACgUUGCGUgcgcuggucgGCCGUGGu -3'
miRNA:   3'- cUUCGGCGG----GUGgAACGCG----------CGGCACC- -5'
26544 3' -60.5 NC_005357.1 + 11184 0.67 0.330451
Target:  5'- --cGUCGCCCGgCUcguagcugggccGCGCGCCG-GGg -3'
miRNA:   3'- cuuCGGCGGGUgGAa-----------CGCGCGGCaCC- -5'
26544 3' -60.5 NC_005357.1 + 12665 0.67 0.324162
Target:  5'- --cGUCGCCCAUCaUGCGCagGCgCGUGu -3'
miRNA:   3'- cuuCGGCGGGUGGaACGCG--CG-GCACc -5'
26544 3' -60.5 NC_005357.1 + 13771 0.7 0.211301
Target:  5'- cGAGGCCGCCggCACCgaucuggcacUGCGCGCgGaacUGGc -3'
miRNA:   3'- -CUUCGGCGG--GUGGa---------ACGCGCGgC---ACC- -5'
26544 3' -60.5 NC_005357.1 + 13854 0.68 0.259552
Target:  5'- --cGCUGCCggugGCCgacgUGCGCGCCGcgaUGGc -3'
miRNA:   3'- cuuCGGCGGg---UGGa---ACGCGCGGC---ACC- -5'
26544 3' -60.5 NC_005357.1 + 14097 0.66 0.364932
Target:  5'- cGAGGCCaagGCCaucgaguccgaCGCCgaGCGCGCCGa-- -3'
miRNA:   3'- -CUUCGG---CGG-----------GUGGaaCGCGCGGCacc -5'
26544 3' -60.5 NC_005357.1 + 14940 0.67 0.301374
Target:  5'- cGAGGCCGCCgGcauCCUcGCGUGgugCGUGGc -3'
miRNA:   3'- -CUUCGGCGGgU---GGAaCGCGCg--GCACC- -5'
26544 3' -60.5 NC_005357.1 + 15086 0.69 0.228423
Target:  5'- cAGGCUGCUUugCUgcgaccGCGCGCCGUa- -3'
miRNA:   3'- cUUCGGCGGGugGAa-----CGCGCGGCAcc -5'
26544 3' -60.5 NC_005357.1 + 15109 0.7 0.1902
Target:  5'- aAAGCaaCGCgCGCCUgUGgGCGUCGUGGg -3'
miRNA:   3'- cUUCG--GCGgGUGGA-ACgCGCGGCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.