miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26544 3' -60.5 NC_005357.1 + 4153 1.09 0.000226
Target:  5'- gGAAGCCGCCCACCUUGCGCGCCGUGGu -3'
miRNA:   3'- -CUUCGGCGGGUGGAACGCGCGGCACC- -5'
26544 3' -60.5 NC_005357.1 + 8036 0.74 0.098759
Target:  5'- aGGGCCGCCguCCUUGC-CGCCGUc- -3'
miRNA:   3'- cUUCGGCGGguGGAACGcGCGGCAcc -5'
26544 3' -60.5 NC_005357.1 + 33103 0.74 0.107383
Target:  5'- --cGCCGCCCGCCgcgccgacGUGCGCCGccaGGu -3'
miRNA:   3'- cuuCGGCGGGUGGaa------CGCGCGGCa--CC- -5'
26544 3' -60.5 NC_005357.1 + 601 0.73 0.11671
Target:  5'- -uGGCCGCCUgcgggucgGCCa-GCaGCGCCGUGGa -3'
miRNA:   3'- cuUCGGCGGG--------UGGaaCG-CGCGGCACC- -5'
26544 3' -60.5 NC_005357.1 + 11157 0.72 0.137665
Target:  5'- uGGGCCGCCugcgCACgUUGCGUgcgcuggucgGCCGUGGu -3'
miRNA:   3'- cUUCGGCGG----GUGgAACGCG----------CGGCACC- -5'
26544 3' -60.5 NC_005357.1 + 28557 0.72 0.149394
Target:  5'- -cGGCCGCCgGCCaucgcgGCGCGCaCGUcGGc -3'
miRNA:   3'- cuUCGGCGGgUGGaa----CGCGCG-GCA-CC- -5'
26544 3' -60.5 NC_005357.1 + 28986 0.72 0.153502
Target:  5'- cGAGGCCGCCaAgCUgGCGggccUGCCGUGGg -3'
miRNA:   3'- -CUUCGGCGGgUgGAaCGC----GCGGCACC- -5'
26544 3' -60.5 NC_005357.1 + 35326 0.71 0.162026
Target:  5'- --cGCaGUCCAUCgugcgcguggGCGCGCCGUGGg -3'
miRNA:   3'- cuuCGgCGGGUGGaa--------CGCGCGGCACC- -5'
26544 3' -60.5 NC_005357.1 + 677 0.71 0.170973
Target:  5'- cAGGCCGCCUACg--GCgGCGCCGgccGGg -3'
miRNA:   3'- cUUCGGCGGGUGgaaCG-CGCGGCa--CC- -5'
26544 3' -60.5 NC_005357.1 + 29037 0.71 0.18036
Target:  5'- cGAuGCCGCCUACaaccGCGCGCUG-GGc -3'
miRNA:   3'- -CUuCGGCGGGUGgaa-CGCGCGGCaCC- -5'
26544 3' -60.5 NC_005357.1 + 15109 0.7 0.1902
Target:  5'- aAAGCaaCGCgCGCCUgUGgGCGUCGUGGg -3'
miRNA:   3'- cUUCG--GCGgGUGGA-ACgCGCGGCACC- -5'
26544 3' -60.5 NC_005357.1 + 19932 0.7 0.195295
Target:  5'- --cGCCGCCgAacuCCUUGuCG-GCCGUGGa -3'
miRNA:   3'- cuuCGGCGGgU---GGAAC-GCgCGGCACC- -5'
26544 3' -60.5 NC_005357.1 + 8644 0.7 0.195295
Target:  5'- cGAGGUCGCCgGCCUUcauCGCGCgGUcGGc -3'
miRNA:   3'- -CUUCGGCGGgUGGAAc--GCGCGgCA-CC- -5'
26544 3' -60.5 NC_005357.1 + 21131 0.7 0.211301
Target:  5'- cGAcGCUGCCCAgCUUgGC-CGCCGUGu -3'
miRNA:   3'- -CUuCGGCGGGUgGAA-CGcGCGGCACc -5'
26544 3' -60.5 NC_005357.1 + 18424 0.7 0.211301
Target:  5'- -uGGCCgacgcGCCCACCUucgccagucUGUGCGCCGa-- -3'
miRNA:   3'- cuUCGG-----CGGGUGGA---------ACGCGCGGCacc -5'
26544 3' -60.5 NC_005357.1 + 13771 0.7 0.211301
Target:  5'- cGAGGCCGCCggCACCgaucuggcacUGCGCGCgGaacUGGc -3'
miRNA:   3'- -CUUCGGCGG--GUGGa---------ACGCGCGgC---ACC- -5'
26544 3' -60.5 NC_005357.1 + 7259 0.7 0.211301
Target:  5'- cGAuGUCGCCgGCCUUGUGCagcuucucgGCgGUGGu -3'
miRNA:   3'- -CUuCGGCGGgUGGAACGCG---------CGgCACC- -5'
26544 3' -60.5 NC_005357.1 + 41331 0.7 0.217447
Target:  5'- --uGCCGCCUACCgccgccaacaugaagUacGCGCGCCG-GGu -3'
miRNA:   3'- cuuCGGCGGGUGGa--------------A--CGCGCGGCaCC- -5'
26544 3' -60.5 NC_005357.1 + 16383 0.69 0.220864
Target:  5'- uGGAGCgCGCCCGCCgcGCGggcuuugaugccauCGCCGaGGa -3'
miRNA:   3'- -CUUCG-GCGGGUGGaaCGC--------------GCGGCaCC- -5'
26544 3' -60.5 NC_005357.1 + 15086 0.69 0.228423
Target:  5'- cAGGCUGCUUugCUgcgaccGCGCGCCGUa- -3'
miRNA:   3'- cUUCGGCGGGugGAa-----CGCGCGGCAcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.