Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26544 | 3' | -60.5 | NC_005357.1 | + | 23469 | 0.66 | 0.348207 |
Target: 5'- ----aCGCCgGCgUggaacagGUGCGCCGUGGg -3' miRNA: 3'- cuucgGCGGgUGgAa------CGCGCGGCACC- -5' |
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26544 | 3' | -60.5 | NC_005357.1 | + | 980 | 0.69 | 0.240479 |
Target: 5'- -cAGCCacuuGgCCGCCUgGCgGUGCCGUGGu -3' miRNA: 3'- cuUCGG----CgGGUGGAaCG-CGCGGCACC- -5' |
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26544 | 3' | -60.5 | NC_005357.1 | + | 38379 | 0.68 | 0.259552 |
Target: 5'- uGGGCCGCUgGCCUgccGCuCGCCGcGGc -3' miRNA: 3'- cUUCGGCGGgUGGAa--CGcGCGGCaCC- -5' |
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26544 | 3' | -60.5 | NC_005357.1 | + | 33877 | 0.68 | 0.279843 |
Target: 5'- --cGCUGCCCGCCaucgGCGCgGCUGUc- -3' miRNA: 3'- cuuCGGCGGGUGGaa--CGCG-CGGCAcc -5' |
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26544 | 3' | -60.5 | NC_005357.1 | + | 36997 | 0.68 | 0.286881 |
Target: 5'- ---cUCGCCCacGCCgccaucCGCGCCGUGGa -3' miRNA: 3'- cuucGGCGGG--UGGaac---GCGCGGCACC- -5' |
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26544 | 3' | -60.5 | NC_005357.1 | + | 18090 | 0.67 | 0.316426 |
Target: 5'- cGAAGCCGgCgcgaaccaggaCGCCUU-CGCGCCGUccGGu -3' miRNA: 3'- -CUUCGGCgG-----------GUGGAAcGCGCGGCA--CC- -5' |
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26544 | 3' | -60.5 | NC_005357.1 | + | 12665 | 0.67 | 0.324162 |
Target: 5'- --cGUCGCCCAUCaUGCGCagGCgCGUGu -3' miRNA: 3'- cuuCGGCGGGUGGaACGCG--CG-GCACc -5' |
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26544 | 3' | -60.5 | NC_005357.1 | + | 34701 | 0.67 | 0.332037 |
Target: 5'- cAAGCCGgCCGCCgagcGUGCGCUGc-- -3' miRNA: 3'- cUUCGGCgGGUGGaa--CGCGCGGCacc -5' |
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26544 | 3' | -60.5 | NC_005357.1 | + | 16943 | 0.67 | 0.340053 |
Target: 5'- cGgcGCCGUCCAgCa-GCGUGCCGcguUGGu -3' miRNA: 3'- -CuuCGGCGGGUgGaaCGCGCGGC---ACC- -5' |
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26544 | 3' | -60.5 | NC_005357.1 | + | 37982 | 0.69 | 0.228423 |
Target: 5'- aGAAGCCGCaCGCCUggcgguguUGCG-GCCG-GGu -3' miRNA: 3'- -CUUCGGCGgGUGGA--------ACGCgCGGCaCC- -5' |
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26544 | 3' | -60.5 | NC_005357.1 | + | 15086 | 0.69 | 0.228423 |
Target: 5'- cAGGCUGCUUugCUgcgaccGCGCGCCGUa- -3' miRNA: 3'- cUUCGGCGGGugGAa-----CGCGCGGCAcc -5' |
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26544 | 3' | -60.5 | NC_005357.1 | + | 41331 | 0.7 | 0.217447 |
Target: 5'- --uGCCGCCUACCgccgccaacaugaagUacGCGCGCCG-GGu -3' miRNA: 3'- cuuCGGCGGGUGGa--------------A--CGCGCGGCaCC- -5' |
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26544 | 3' | -60.5 | NC_005357.1 | + | 8036 | 0.74 | 0.098759 |
Target: 5'- aGGGCCGCCguCCUUGC-CGCCGUc- -3' miRNA: 3'- cUUCGGCGGguGGAACGcGCGGCAcc -5' |
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26544 | 3' | -60.5 | NC_005357.1 | + | 601 | 0.73 | 0.11671 |
Target: 5'- -uGGCCGCCUgcgggucgGCCa-GCaGCGCCGUGGa -3' miRNA: 3'- cuUCGGCGGG--------UGGaaCG-CGCGGCACC- -5' |
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26544 | 3' | -60.5 | NC_005357.1 | + | 11157 | 0.72 | 0.137665 |
Target: 5'- uGGGCCGCCugcgCACgUUGCGUgcgcuggucgGCCGUGGu -3' miRNA: 3'- cUUCGGCGG----GUGgAACGCG----------CGGCACC- -5' |
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26544 | 3' | -60.5 | NC_005357.1 | + | 28557 | 0.72 | 0.149394 |
Target: 5'- -cGGCCGCCgGCCaucgcgGCGCGCaCGUcGGc -3' miRNA: 3'- cuUCGGCGGgUGGaa----CGCGCG-GCA-CC- -5' |
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26544 | 3' | -60.5 | NC_005357.1 | + | 677 | 0.71 | 0.170973 |
Target: 5'- cAGGCCGCCUACg--GCgGCGCCGgccGGg -3' miRNA: 3'- cUUCGGCGGGUGgaaCG-CGCGGCa--CC- -5' |
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26544 | 3' | -60.5 | NC_005357.1 | + | 8644 | 0.7 | 0.195295 |
Target: 5'- cGAGGUCGCCgGCCUUcauCGCGCgGUcGGc -3' miRNA: 3'- -CUUCGGCGGgUGGAAc--GCGCGgCA-CC- -5' |
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26544 | 3' | -60.5 | NC_005357.1 | + | 19932 | 0.7 | 0.195295 |
Target: 5'- --cGCCGCCgAacuCCUUGuCG-GCCGUGGa -3' miRNA: 3'- cuuCGGCGGgU---GGAAC-GCgCGGCACC- -5' |
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26544 | 3' | -60.5 | NC_005357.1 | + | 21131 | 0.7 | 0.211301 |
Target: 5'- cGAcGCUGCCCAgCUUgGC-CGCCGUGu -3' miRNA: 3'- -CUuCGGCGGGUgGAA-CGcGCGGCACc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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