miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26544 3' -60.5 NC_005357.1 + 33103 0.74 0.107383
Target:  5'- --cGCCGCCCGCCgcgccgacGUGCGCCGccaGGu -3'
miRNA:   3'- cuuCGGCGGGUGGaa------CGCGCGGCa--CC- -5'
26544 3' -60.5 NC_005357.1 + 14940 0.67 0.301374
Target:  5'- cGAGGCCGCCgGcauCCUcGCGUGgugCGUGGc -3'
miRNA:   3'- -CUUCGGCGGgU---GGAaCGCGCg--GCACC- -5'
26544 3' -60.5 NC_005357.1 + 34211 0.67 0.30883
Target:  5'- -cGGCCGCCgACCa-GCGCgacuacgagGCCGUGc -3'
miRNA:   3'- cuUCGGCGGgUGGaaCGCG---------CGGCACc -5'
26544 3' -60.5 NC_005357.1 + 18214 0.66 0.39104
Target:  5'- -cGGCCGCUCGCCggacuuugGCaGCGCCuacGUGc -3'
miRNA:   3'- cuUCGGCGGGUGGaa------CG-CGCGG---CACc -5'
26544 3' -60.5 NC_005357.1 + 15109 0.7 0.1902
Target:  5'- aAAGCaaCGCgCGCCUgUGgGCGUCGUGGg -3'
miRNA:   3'- cUUCG--GCGgGUGGA-ACgCGCGGCACC- -5'
26544 3' -60.5 NC_005357.1 + 7259 0.7 0.211301
Target:  5'- cGAuGUCGCCgGCCUUGUGCagcuucucgGCgGUGGu -3'
miRNA:   3'- -CUuCGGCGGgUGGAACGCG---------CGgCACC- -5'
26544 3' -60.5 NC_005357.1 + 18424 0.7 0.211301
Target:  5'- -uGGCCgacgcGCCCACCUucgccagucUGUGCGCCGa-- -3'
miRNA:   3'- cuUCGG-----CGGGUGGA---------ACGCGCGGCacc -5'
26544 3' -60.5 NC_005357.1 + 16383 0.69 0.220864
Target:  5'- uGGAGCgCGCCCGCCgcGCGggcuuugaugccauCGCCGaGGa -3'
miRNA:   3'- -CUUCG-GCGGGUGGaaCGC--------------GCGGCaCC- -5'
26544 3' -60.5 NC_005357.1 + 1762 0.68 0.259552
Target:  5'- -uGGCCgGCCUgcGCCUgGCGCGUCG-GGc -3'
miRNA:   3'- cuUCGG-CGGG--UGGAaCGCGCGGCaCC- -5'
26544 3' -60.5 NC_005357.1 + 40971 0.68 0.286881
Target:  5'- gGAGGCCGCCgACC----GCGCCGUc- -3'
miRNA:   3'- -CUUCGGCGGgUGGaacgCGCGGCAcc -5'
26544 3' -60.5 NC_005357.1 + 20135 0.68 0.259552
Target:  5'- --uGCUGCCCGaCUU-CGaCGCCGUGGu -3'
miRNA:   3'- cuuCGGCGGGUgGAAcGC-GCGGCACC- -5'
26544 3' -60.5 NC_005357.1 + 18892 0.69 0.253061
Target:  5'- cGAGGCCaucgaccgcguGCgCCGCCUggaagGCGCGCuCGcGGa -3'
miRNA:   3'- -CUUCGG-----------CG-GGUGGAa----CGCGCG-GCaCC- -5'
26544 3' -60.5 NC_005357.1 + 28986 0.72 0.153502
Target:  5'- cGAGGCCGCCaAgCUgGCGggccUGCCGUGGg -3'
miRNA:   3'- -CUUCGGCGGgUgGAaCGC----GCGGCACC- -5'
26544 3' -60.5 NC_005357.1 + 19311 0.68 0.279843
Target:  5'- aGGAGCCGUuaccgcugUCGCCguggGCGCcGCCGuUGGc -3'
miRNA:   3'- -CUUCGGCG--------GGUGGaa--CGCG-CGGC-ACC- -5'
26544 3' -60.5 NC_005357.1 + 35326 0.71 0.162026
Target:  5'- --cGCaGUCCAUCgugcgcguggGCGCGCCGUGGg -3'
miRNA:   3'- cuuCGgCGGGUGGaa--------CGCGCGGCACC- -5'
26544 3' -60.5 NC_005357.1 + 8688 0.69 0.234386
Target:  5'- --cGCCGCCCAgg-UGUGCGCCGc-- -3'
miRNA:   3'- cuuCGGCGGGUggaACGCGCGGCacc -5'
26544 3' -60.5 NC_005357.1 + 40196 0.68 0.286881
Target:  5'- -cGGCCacGCgCCGCCUgcUGCGCGUgGUGc -3'
miRNA:   3'- cuUCGG--CG-GGUGGA--ACGCGCGgCACc -5'
26544 3' -60.5 NC_005357.1 + 16675 0.67 0.301374
Target:  5'- --cGCCGCCCAgCa-GCGCGCCcagcGUGc -3'
miRNA:   3'- cuuCGGCGGGUgGaaCGCGCGG----CACc -5'
26544 3' -60.5 NC_005357.1 + 29037 0.71 0.18036
Target:  5'- cGAuGCCGCCUACaaccGCGCGCUG-GGc -3'
miRNA:   3'- -CUuCGGCGGGUGgaa-CGCGCGGCaCC- -5'
26544 3' -60.5 NC_005357.1 + 13771 0.7 0.211301
Target:  5'- cGAGGCCGCCggCACCgaucuggcacUGCGCGCgGaacUGGc -3'
miRNA:   3'- -CUUCGGCGG--GUGGa---------ACGCGCGgC---ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.