miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26544 3' -60.5 NC_005357.1 + 41785 0.66 0.370056
Target:  5'- aAAGCC-CCCGCCUgacccguucaccCGCGCCGaGGc -3'
miRNA:   3'- cUUCGGcGGGUGGAac----------GCGCGGCaCC- -5'
26544 3' -60.5 NC_005357.1 + 41742 0.67 0.324162
Target:  5'- uGGGCgGCCCgGCCg-GCGCcGCCGUaGGc -3'
miRNA:   3'- cUUCGgCGGG-UGGaaCGCG-CGGCA-CC- -5'
26544 3' -60.5 NC_005357.1 + 41331 0.7 0.217447
Target:  5'- --uGCCGCCUACCgccgccaacaugaagUacGCGCGCCG-GGu -3'
miRNA:   3'- cuuCGGCGGGUGGa--------------A--CGCGCGGCaCC- -5'
26544 3' -60.5 NC_005357.1 + 40971 0.68 0.286881
Target:  5'- gGAGGCCGCCgACC----GCGCCGUc- -3'
miRNA:   3'- -CUUCGGCGGgUGGaacgCGCGGCAcc -5'
26544 3' -60.5 NC_005357.1 + 40196 0.68 0.286881
Target:  5'- -cGGCCacGCgCCGCCUgcUGCGCGUgGUGc -3'
miRNA:   3'- cuUCGG--CG-GGUGGA--ACGCGCGgCACc -5'
26544 3' -60.5 NC_005357.1 + 38379 0.68 0.259552
Target:  5'- uGGGCCGCUgGCCUgccGCuCGCCGcGGc -3'
miRNA:   3'- cUUCGGCGGgUGGAa--CGcGCGGCaCC- -5'
26544 3' -60.5 NC_005357.1 + 38339 0.66 0.356501
Target:  5'- --cGCCGCCCACCUgGCcgGC-CUGaUGGc -3'
miRNA:   3'- cuuCGGCGGGUGGAaCG--CGcGGC-ACC- -5'
26544 3' -60.5 NC_005357.1 + 37982 0.69 0.228423
Target:  5'- aGAAGCCGCaCGCCUggcgguguUGCG-GCCG-GGu -3'
miRNA:   3'- -CUUCGGCGgGUGGA--------ACGCgCGGCaCC- -5'
26544 3' -60.5 NC_005357.1 + 36997 0.68 0.286881
Target:  5'- ---cUCGCCCacGCCgccaucCGCGCCGUGGa -3'
miRNA:   3'- cuucGGCGGG--UGGaac---GCGCGGCACC- -5'
26544 3' -60.5 NC_005357.1 + 35326 0.71 0.162026
Target:  5'- --cGCaGUCCAUCgugcgcguggGCGCGCCGUGGg -3'
miRNA:   3'- cuuCGgCGGGUGGaa--------CGCGCGGCACC- -5'
26544 3' -60.5 NC_005357.1 + 34701 0.67 0.332037
Target:  5'- cAAGCCGgCCGCCgagcGUGCGCUGc-- -3'
miRNA:   3'- cUUCGGCgGGUGGaa--CGCGCGGCacc -5'
26544 3' -60.5 NC_005357.1 + 34584 0.67 0.316426
Target:  5'- cGAAGcCCGCCuCACCau-CGCGCUGaacaUGGg -3'
miRNA:   3'- -CUUC-GGCGG-GUGGaacGCGCGGC----ACC- -5'
26544 3' -60.5 NC_005357.1 + 34211 0.67 0.30883
Target:  5'- -cGGCCGCCgACCa-GCGCgacuacgagGCCGUGc -3'
miRNA:   3'- cuUCGGCGGgUGGaaCGCG---------CGGCACc -5'
26544 3' -60.5 NC_005357.1 + 33877 0.68 0.279843
Target:  5'- --cGCUGCCCGCCaucgGCGCgGCUGUc- -3'
miRNA:   3'- cuuCGGCGGGUGGaa--CGCG-CGGCAcc -5'
26544 3' -60.5 NC_005357.1 + 33103 0.74 0.107383
Target:  5'- --cGCCGCCCGCCgcgccgacGUGCGCCGccaGGu -3'
miRNA:   3'- cuuCGGCGGGUGGaa------CGCGCGGCa--CC- -5'
26544 3' -60.5 NC_005357.1 + 31506 0.66 0.385722
Target:  5'- --uGCCGCCgGCgUgcugcugggccucgcUGUGuUGCCGUGGa -3'
miRNA:   3'- cuuCGGCGGgUGgA---------------ACGC-GCGGCACC- -5'
26544 3' -60.5 NC_005357.1 + 30138 0.66 0.356501
Target:  5'- --cGCCGCCgGCCUgcacCGCGUCGg-- -3'
miRNA:   3'- cuuCGGCGGgUGGAac--GCGCGGCacc -5'
26544 3' -60.5 NC_005357.1 + 29667 0.66 0.373499
Target:  5'- --cGuuGCCCAgCaggGCGCGgCCGUGu -3'
miRNA:   3'- cuuCggCGGGUgGaa-CGCGC-GGCACc -5'
26544 3' -60.5 NC_005357.1 + 29037 0.71 0.18036
Target:  5'- cGAuGCCGCCUACaaccGCGCGCUG-GGc -3'
miRNA:   3'- -CUuCGGCGGGUGgaa-CGCGCGGCaCC- -5'
26544 3' -60.5 NC_005357.1 + 28986 0.72 0.153502
Target:  5'- cGAGGCCGCCaAgCUgGCGggccUGCCGUGGg -3'
miRNA:   3'- -CUUCGGCGGgUgGAaCGC----GCGGCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.