Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26549 | 5' | -60.2 | NC_005357.1 | + | 14971 | 0.68 | 0.3032 |
Target: 5'- -gCGGCGCGCUGGCauaccagcgccaggGCCUgcggccgccgGGCGCGGu -3' miRNA: 3'- ggGCUGCGCGACUG--------------CGGGa---------CUGCGUC- -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 15357 | 0.71 | 0.204155 |
Target: 5'- uUCGACcagcagGgGCUGACGCCCUGA-GCAu -3' miRNA: 3'- gGGCUG------CgCGACUGCGGGACUgCGUc -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 16114 | 0.68 | 0.320479 |
Target: 5'- aCCGGCuGCaCgucgGugGCCCcGACGUAGg -3' miRNA: 3'- gGGCUG-CGcGa---CugCGGGaCUGCGUC- -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 16373 | 0.66 | 0.395028 |
Target: 5'- gCCGA-GCGCaUGgagcGCGCCCgccGCGCGGg -3' miRNA: 3'- gGGCUgCGCG-AC----UGCGGGac-UGCGUC- -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 17111 | 0.66 | 0.395028 |
Target: 5'- uCCCGGCGaCGa--GCGCCg-GugGCAGg -3' miRNA: 3'- -GGGCUGC-GCgacUGCGGgaCugCGUC- -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 17348 | 0.7 | 0.232233 |
Target: 5'- gCCgGGCGCGCUG-CGCUggGugGCGa -3' miRNA: 3'- -GGgCUGCGCGACuGCGGgaCugCGUc -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 17925 | 0.66 | 0.435332 |
Target: 5'- aUCGGCGUG--GGCGCcagccccuacgacuuCCUGGCGCAGg -3' miRNA: 3'- gGGCUGCGCgaCUGCG---------------GGACUGCGUC- -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 18094 | 0.69 | 0.263493 |
Target: 5'- gCCGGCGCGaaccagGACGCCUUcGCGCc- -3' miRNA: 3'- gGGCUGCGCga----CUGCGGGAcUGCGuc -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 20735 | 0.67 | 0.368967 |
Target: 5'- gCCGACauGCuGCUGGCGCCgUagaGGCGCu- -3' miRNA: 3'- gGGCUG--CG-CGACUGCGGgA---CUGCGuc -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 21148 | 0.66 | 0.413049 |
Target: 5'- gCCGcCGUGUccGCGCCCUGguucaacaGCGCGGc -3' miRNA: 3'- gGGCuGCGCGacUGCGGGAC--------UGCGUC- -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 21777 | 0.71 | 0.183856 |
Target: 5'- gCCCGGCacgGUGCUGAUGUCCUGGuucuugGCGGa -3' miRNA: 3'- -GGGCUG---CGCGACUGCGGGACUg-----CGUC- -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 22714 | 0.67 | 0.336095 |
Target: 5'- -gCGAUGCGC-GGCGCCUcuAUGCAGc -3' miRNA: 3'- ggGCUGCGCGaCUGCGGGacUGCGUC- -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 23095 | 0.7 | 0.22063 |
Target: 5'- cCCCGACGCcaacgGC-GGCGCCCacGGCGaCAGc -3' miRNA: 3'- -GGGCUGCG-----CGaCUGCGGGa-CUGC-GUC- -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 24150 | 0.72 | 0.161005 |
Target: 5'- aCCGGCcCGCUGACGgCCggcaaguucucGGCGCAGg -3' miRNA: 3'- gGGCUGcGCGACUGCgGGa----------CUGCGUC- -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 24328 | 0.68 | 0.305412 |
Target: 5'- -aCGGCGCGaaGGCGUCCUGGuuCGCGc -3' miRNA: 3'- ggGCUGCGCgaCUGCGGGACU--GCGUc -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 27438 | 0.72 | 0.179067 |
Target: 5'- gCCCGGCG-GCcGcAgGCCCUGGCGCuGg -3' miRNA: 3'- -GGGCUGCgCGaC-UgCGGGACUGCGuC- -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 28315 | 0.67 | 0.380114 |
Target: 5'- aCUCGGCGCGCUcGGCgucggacucgaugGCCUUGgccucgucgggcagcGCGCGGa -3' miRNA: 3'- -GGGCUGCGCGA-CUG-------------CGGGAC---------------UGCGUC- -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 29139 | 0.71 | 0.198905 |
Target: 5'- cCCCGGCGCGCUGcaaucgGCGCUgaaaGACGCc- -3' miRNA: 3'- -GGGCUGCGCGAC------UGCGGga--CUGCGuc -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 29818 | 0.66 | 0.386209 |
Target: 5'- gCCGAgCGCGUcGGCGCCau-GCGCAa -3' miRNA: 3'- gGGCU-GCGCGaCUGCGGgacUGCGUc -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 29919 | 0.77 | 0.070464 |
Target: 5'- cCUCGACGCGCUGuucaugaaaACGCCaCUGuGCGCGGc -3' miRNA: 3'- -GGGCUGCGCGAC---------UGCGG-GAC-UGCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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